KEGG   Paenibacillus baekrokdamisoli: Back11_53350
Entry
Back11_53350      CDS       T06671                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pbk  Paenibacillus baekrokdamisoli
Pathway
pbk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pbk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Back11_53350 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbk03021]
    Back11_53350 (rpoC)
   03400 DNA repair and recombination proteins [BR:pbk03400]
    Back11_53350 (rpoC)
Enzymes [BR:pbk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Back11_53350 (rpoC)
Transcription machinery [BR:pbk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Back11_53350 (rpoC)
DNA repair and recombination proteins [BR:pbk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Back11_53350 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid
Other DBs
NCBI-ProteinID: BBH23990
UniProt: A0A3G9IYN3
Position
6041559..6045188
AA seq 1209 aa
MLDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFHAGMGAEAVKKLLQ
DIDVERELETLKEDLRTAQGQRRNRAIKRLEVIEAFRNSGNMPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEAKGSGSVFSTVNEAISAYQRGIVSLHARIFIP
VKVLNKTIFTEAQQKSLISTTVGKVIFNEIYPEDFPYINEPTKVNLLQGTPDRYFVHEKG
ADLEKFLDEVPQMGGVGKEYLGLIIAECFRKYHTTKTSIMLDKIKQLGFTYSTRAGITIA
VSDVIVPPEKVEILRESEDKVKVVSNQYRRGLITNEERYDRVIEIWSKTKDSITDILMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFSVSKIQDGKEVIEDL
YDRIEGRYSFETVRNPKTGEIILHRNQLIDSNKAEEVIDAGVEKLQIRSVLSCRARHGVC
KICYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISELDGVIKDIRETKDRREIEVQGEAESKVYAVTYGSRIRVTKGKHIEA
GDELTDGSIDPKDMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
VEAGDTALLPGAFVDIHEYEANNREAILAGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMQRYRGIKLSGAGMDDYAVAAEEQ
QEAVTVTVE
NT seq 3630 nt   +upstreamnt  +downstreamnt
ttgttggacgtgaacaacttcgagtatatgaagattggtttggcatctccggataaaatc
cgctcgtggtcccgcggagaagtgaagaaaccggaaacgatcaactacaggacgctgaaa
ccggagaaagaaggcctgttttgcgaaaaaatcttcggaccgacaaaggactgggagtgt
cattgcggcaagtataaacgcgtgcgttataaaggcgtagtttgtgatcgctgtggtgtt
gaagtaactcgtgctaaagtccgtcgcgaacggatggggcatattgagcttgctgctcct
gtatcgcatatttggtactttaaaggtattccgagccgcatgggtcttgcactggacatg
tcgcctcgttcgctggaagagattatttattttgcatcttatgttgttacggatccaggg
gatacgccgcttgagaaaaagcagctattgtcggagaaggaatatcgcagctaccgggag
aagtacggctacggcttccatgctggcatgggtgcagaagcagtgaagaagcttcttcaa
gatattgatgtagaacgcgagcttgagacgttgaaagaagatcttcgtacggctcaagga
caacgtcgtaatcgcgcgattaaacgactcgaggtcatagaagcattccgtaactctggt
aatatgccagaatggatgattcttgatgttctaccggttatccctcctgagctgcgccca
atggtacaactcgatggtggccgttttgcaacgtctgaccttaatgatctatatcgtcgt
gttattaaccggaacaatcgtttgaagcgactccttgatcttggcgcacctgatattatc
gtgcaaaatgagaaacggatgcttcaagaagcagttgatgctcttatcgataacggacgc
cgtggtcgtccggtaacaggtcctggtaaccgtccgcttaaatccctcagccatatgctg
aaaggtaagcaaggacgtttccgtcagaacttacttggtaaacgtgttgactactctggt
cgttccgttatcgtagtaggacctagcctcaaaatgtaccaatgtggtcttcctaaagaa
atggcgcttgaacttttcaagcctttcgttatgaaggagcttgtaaataaaggactcgcg
cataatattaagagcgctaaacgcaaagttgaacgtgtaagcccagaggtttgggacgtt
cttgaagaagttattaaggagcatccggttcttttgaaccgtgcaccaactcttcataga
ctgggtatccaagcatttgagccgatccttgttgagggacgcgcaatcaaattgcatccg
ctcgtatgtacagcatataatgccgatttcgatggtgaccaaatggccgttcacgtacca
ttgtctgcagaagcacaagctgaagctagactattgatgcttgcatcgggtaacattttg
aacccgaaagacggtaaaccggttgtcacgccttcacaggatatggtcttaggaagcttc
tacttgacgatggataataaagaggctaaaggtagtggatcggtatttagtaccgttaac
gaagcgatttctgcgtatcaacgtggtatcgtatccctacatgctcgtatatttatcccg
gttaaggtattgaataagacaatctttacggaagctcaacagaagtcgcttatttccaca
actgtaggaaaagtgatattcaatgagatttatccagaagatttcccttacatcaatgag
cctactaaagttaaccttttgcaaggaacgccggatagatatttcgtacacgaaaaaggt
gccgatcttgagaagttcttggatgaagtaccacaaatgggcggagtcggtaaagaatat
ctcggtttaattattgctgagtgtttccgtaaataccacaccaccaaaacatccattatg
cttgataaaatcaaacagcttggttttacctactcaactcgtgcaggtattacgattgcc
gtatccgacgttatcgtaccgcctgagaaggttgaaattctcagggaatcggaagataag
gttaaagtcgtttcaaaccaatatcgtagaggtttgatcacgaatgaagaacgttatgac
cgtgttattgaaatctggagcaaaacgaaagattccattacggatatcctcatgaaatcg
atggatcgttataattccatcatgctcatggttgattccaaagcgcggggtaacaaatca
cagattactcaacttggtggtatgcgtggtctgatggccaatccatccggtcgtattatt
gaattgccaatcaaatcgaacttccgtgaaggcctcactgtactcgagtactttatctcg
acgcatggtgctcgtaaaggtcttgccgatacagcgctccgtacagccgattcagggtac
ctgactcgtcgtctggttgacgttgcgcaggatgtaatcgttcgtgaagatgattgtgga
acagacaaaggattctctgtaagcaaaattcaagacggtaaagaggtaattgaagatcta
tacgaccgtattgaaggccgctactcctttgaaacagttcgcaatccgaagacaggcgag
atcattttgcatcgtaaccagcttattgattccaataaagctgaagaagttattgatgct
ggcgttgagaaactgcagattcgttctgtccttagctgtcgtgcgcgtcacggtgtttgt
aaaatttgttacggccgtaaccttgcaacaggtaagtttgtagagatcggagaagcagtt
ggtattatcgcagctcaatcgatcggtgaaccaggaacgcagcttacgatgcgtactttc
cataccggtggtgtagctggagacgatatcacacaaggtttgccgcgtattcaagagctc
ttcgaggctcgtaatcctaaaggtcaggcgattatttcagagcttgatggtgttattaaa
gacatcagagaaacgaaagatcgtcgtgaaattgaagttcagggtgaagcggaatcgaaa
gtatatgcggttacctatggttcgcgtatccgtgttacgaaaggtaagcatattgaagcc
ggcgatgaactgacagatggttcgatcgatcctaaagatatgcttcgcatcaaaggaatt
cgaggcgtgcagaactatattctacaagaggttcagcgcgtttatcgtaaccaaggggta
gaaatcaacgataagcatattgaagttatgatcaaacaaatgcttcgtaaaatacgtatc
gttgaagcaggcgatacggcacttctaccaggtgcgttcgtagatatccatgaatacgaa
gctaataaccgtgaagctattctagctggcaaagagcctgctgtcgcaaaaccagtcttg
cttggtattacgaaagcatcgctcgaaaccgattcattcctttctgcagcatccttccag
gagacaacacgtgttcttacggatgcagcaattaaaggaaaggttgaccaattgcttggc
ttgaaagagaatgttatcatcggtaagctaattccagctggtacaggaatgcagcgttac
cgtggtatcaagctttcaggtgctggaatggatgattatgcagttgcagctgaagaacag
caagaagcggtaactgtaacagtagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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