KEGG   Paludisphaera borealis: BSF38_05243
Entry
BSF38_05243       CDS       T04622                                 
Name
(GenBank) hypothetical protein
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
pbor  Paludisphaera borealis
Pathway
pbor03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pbor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    BSF38_05243
  09124 Replication and repair
   03420 Nucleotide excision repair
    BSF38_05243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbor03021]
    BSF38_05243
   03400 DNA repair and recombination proteins [BR:pbor03400]
    BSF38_05243
Enzymes [BR:pbor01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BSF38_05243
Transcription machinery [BR:pbor03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     BSF38_05243
DNA repair and recombination proteins [BR:pbor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     BSF38_05243
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: APW63669
UniProt: A0A1U7CXQ9
Position
6759174..6760892
AA seq 572 aa
MQYNPANPLIVQGDRTILLEVDNPLHAEARDTIAPFAELEKSPEHIHTYRLTPLSLWNAA
AAGVSADEMIAGLETYSKFPLPPNLPADLRDMVSRYGRVKLQRIDGQLRLITTDQPLIEE
LSRQRGVREYLGERLDAVSFAVEDLDRGVLKQGLIAVGYPAEDLAGYAQGAALAVELRET
MRSGGKFVVRDYQRGAVDTFHAGGDVKGGSGVIVLPCGAGKTIVGIAALAAIKTETLILT
TSTTAVEQWKREVLDKTDLDESQVATYTGDSKGIAPVTLATYQIVTYRPKKDGDFPHFGL
FNQRDWGLIIYDEVHLLPAPVFRITADIQARRRLGLTATLVREDHREEDVFSLIGPKKYD
VPWRVLESKGWIAEAQCHEVRLGLPPALRMEYAIAEWRDKFRLASESPTKDDLVELLLEH
HNHPEDRVLVIGQYIKQLRRISERFDIPIITGSTTNSEREDLYGRFRAGAIRRLVLSKVG
NFAIDLPDANVMVQVSGTFGSRQEEAQRLGRILRPKEGERPACFYTLVTRDTREMDFAHH
RQLFLTEQGYSYEIVDESELSARLLAASEPAG
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgcagtacaacccggccaacccgctgatcgtgcagggggatcggacgatcctcctggaa
gtggacaatccgttgcacgccgaggcccgcgatacgatcgcgcccttcgccgaactggag
aagagccccgagcacatccacacgtatcggctgacgccgctttcgctctggaacgcggcc
gcggccggcgtcagcgccgacgagatgatcgcgggcctggaaacctactcgaagtttccg
cttccgcccaaccttccggccgacctccgcgacatggtcagccggtatgggcgggtgaag
cttcagcggatcgacggccagcttcggctgatcacgacggaccagccgctcatcgaggag
ctttcgcgccagcgcggggttcgcgagtacctgggcgagcggctcgacgccgtcagtttc
gccgtcgaagacctcgaccgcggcgtactcaagcaagggctgatcgccgtcggctacccg
gccgaagacctcgccggctacgcgcaaggcgccgccctcgcggtcgagcttcgcgagacg
atgcgatcgggcggcaagttcgtggttcgtgactaccagcgcggcgccgtcgacacgttc
cacgccggcggcgacgtcaaggggggctcgggcgtgatcgtcctgccttgcggcgcgggg
aagaccatcgtcggcatcgcggccctggcggcgatcaagaccgagaccctcatcctgacc
accagcaccaccgccgtcgagcagtggaagcgcgaggttctcgacaagaccgacctcgac
gagtcgcaggtcgccacctacaccggcgactccaaggggatcgccccggtgaccctggcg
acctaccagatcgtcacctaccgacccaagaaggacggcgacttcccgcacttcggcctc
ttcaaccagcgcgactggggcctgatcatttatgacgaggtccacctcttgcccgcgccc
gtcttccggatcaccgccgacatccaggcgcggcgacgcctcggcctgaccgccaccctc
gtccgcgaagaccatcgcgaggaagacgtcttcagcctgatcggccccaagaagtacgac
gtcccctggcgcgtgctcgaatcgaagggctggatcgccgaggcgcagtgccacgaagtc
cggctcgggctgccgccggcgctccgcatggaatacgccatcgccgagtggcgcgacaag
ttccggctggccagcgagagcccgaccaaggacgacctcgtcgaactgctgctcgagcac
cacaatcaccctgaggatcgcgtgctggtgatcggccagtacatcaagcagctccgccgg
atctccgagcggttcgacatcccgatcatcacgggctcgaccacgaattccgagcgtgaa
gacctttacggccggttccgcgccggggcgatccgccggctggtgctgtcgaaggtcggc
aacttcgccatcgacctgcccgacgccaacgtgatggtccaggtgtcgggcacgttcggg
agccgacaggaggaggcgcagcggctgggccgaatcctccgtcccaaggagggcgagcgg
cccgcgtgtttctatacactcgtaacgcgcgacacccgcgagatggacttcgcgcaccat
cgccagctcttcttgaccgagcaaggctacagctacgagatcgtcgacgaatccgagctt
tccgcgcggctgctggccgcgtcggaaccggccggatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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