KEGG   Syntrophotalea carbinolica: Pcar_1561
Entry
Pcar_1561         CDS       T00285                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pca  Syntrophotalea carbinolica
Pathway
pca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pcar_1561 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pca03019]
    Pcar_1561 (pnp)
   03016 Transfer RNA biogenesis [BR:pca03016]
    Pcar_1561 (pnp)
Enzymes [BR:pca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Pcar_1561 (pnp)
Messenger RNA biogenesis [BR:pca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Pcar_1561 (pnp)
Transfer RNA biogenesis [BR:pca03016]
 Prokaryotic type
  tRNA degradation factors
   Pcar_1561 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 PCB_OB S1_2
Other DBs
NCBI-ProteinID: ABA88806
UniProt: Q3A4A1
Position
1825757..1827856
AA seq 699 aa
MAYQKVECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTV
NYQEKFYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVD
EQNDPDTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSG
SRDAIIMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKEKREFSVPEIDPA
VVEKVAELAETRLSEAVKIRTKQDRYAAVAEIKTEILETLAADFEDQEDDISEAFGNLQK
RLVRQMVARDKVRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDE
QRMDNVQSMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDDFP
YTLRVVSDILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGDDIVVLSDIL
GDEDHLGDMDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHILDKMAEAIT
APRSDLSPYAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGCAIDIEDDGRINIASADG
DACKAAIKMIRNLTQEAVVGKLYMATVKKIMEFGAFVEIFPGTEGLVHISELAKERVKKV
TDILQEGDQVLVKCLDIDRQGKIKLSRKEALGQSLPEEG
NT seq 2100 nt   +upstreamnt  +downstreamnt
ttggcttatcaaaaagtagaatgtcagttcaatgggcagacacttacccttgaaaccggc
aaaatggcccgtcaggccgatggtgccgtggttgtcagcttcggcggcaccaaagttctg
tgtactgccgtcagtgccaagcagatgcgcgaaggacagagctttttccctcttaccgtc
aattatcaggaaaaattttatgccggtggcaaaattcccggctctttcttccgccgggaa
cgtggcgccactgagcgcgaaaccctggtgtgtcgtctgatcgacagacccttgcgacct
ctttttcctaaaggatatatgtttgaaacccagatcatgccgactgtgatctcggttgac
gaacagaacgatcccgacaccttggctatggtcggcgcttccgctgccatcgccgtatcc
gacattcccttcgacgggcctgttgctgccgttcgtgtcggtcgtgtcgaaggtaatttg
atcgccaatccgaccattgagcagcgagccgaaagcgatatggatattatcgtttccggt
tcccgcgatgccatcattatggtcgagggcgaaacacggtttatcagcgagcaggaaatg
ctcgatgcgctgttcttcgctcatgaggcgattcagcctctgatcgatgttcagcttgaa
ctggtcaaaatcgccggtaaggaaaaacgcgaattttccgtgccggaaatcgatcctgcg
gttgtggaaaaggttgcggaactggcagaaacccgtctgtccgaagctgttaaaatccgt
accaagcaggaccgttatgctgctgtggcagaaatcaaaacggaaatactggaaaccctg
gccgccgattttgaagatcaggaagacgatataagcgaggctttcggcaatttgcaaaaa
cgccttgtgcgtcagatggtcgctcgcgacaaggtccgtatcgatggccgcgacaagaat
accattcgtccgattacatgcgaaatcggtctgttgccccgcgcccatggcagtgccttg
tttacccggggagaaacgcaggcgttggtggctgcagcccttggtacctccaaagacgag
cagcgcatggacaatgtgcagtctatggaatttaaaaaattcatgctgcactataacttt
ccgccgttctgcgtaggcgaaaccagcatgcgcctgtttcccggacgtcgtgaaatcggc
catggtatgcttgccgagcgctctattgcgcaggtgttgcccaaccacgatgacttcccc
tatacgctacgcgttgtctccgatatcctggagtccaacggctcttcttccatggccagt
gtctgcggtgcctctctggcgctgatggatgccggtgtacctgtcagcgaagccgttgcc
ggtatcgctatggggctgatcaaagagggcgatgatatcgtcgttctttcggatatcctt
ggcgacgaagaccaccttggcgatatggacttcaaggtcaccggtacccgtgaagggatc
accgctctgcagatggatatcaaaattaaaggtgtcagcaaggaaatcatgcagcaggca
ctggagcaggccagggaaggtcgtcttcacattctggataaaatggcggaagccatcacc
gctccgcggagcgatctgtcgccctacgcgccgcgcatcacgaccatacaggttaaaccg
gaccaggtgcgtaccgttatcggaccgggcgggaaaaacgttcgcggaattatcgaagca
acggggtgcgccatcgatatcgaagatgatggccgtatcaacatcgcttcggcggatggg
gatgcctgcaaggccgccatcaaaatgatccggaatctcactcaggaggccgttgtcggc
aagctttatatggcgaccgtcaaaaagatcatggaattcggtgcgtttgtggagattttc
cccggcacggaaggcctggtgcatatttccgaactggccaaggaacgtgtcaaaaaggtc
accgatattttgcaggaaggtgatcaggttcttgttaaatgcctggatatcgaccggcaa
ggcaagatcaagttgtctcgtaaggaagccttggggcaatccctgccggaagaagggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (67)   

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