KEGG   Physeter catodon (sperm whale): 102973944
Entry
102973944         CDS       T06011                                 
Name
(RefSeq) HLA class II histocompatibility antigen, DR alpha chain
  KO
K06752  MHC class II antigen
Organism
pcad  Physeter catodon (sperm whale)
Pathway
pcad04145  Phagosome
pcad04514  Cell adhesion molecules
pcad04612  Antigen processing and presentation
pcad04640  Hematopoietic cell lineage
pcad04658  Th1 and Th2 cell differentiation
pcad04659  Th17 cell differentiation
pcad04672  Intestinal immune network for IgA production
pcad04940  Type I diabetes mellitus
pcad05140  Leishmaniasis
pcad05145  Toxoplasmosis
pcad05150  Staphylococcus aureus infection
pcad05152  Tuberculosis
pcad05164  Influenza A
pcad05166  Human T-cell leukemia virus 1 infection
pcad05168  Herpes simplex virus 1 infection
pcad05169  Epstein-Barr virus infection
pcad05310  Asthma
pcad05320  Autoimmune thyroid disease
pcad05321  Inflammatory bowel disease
pcad05322  Systemic lupus erythematosus
pcad05323  Rheumatoid arthritis
pcad05330  Allograft rejection
pcad05332  Graft-versus-host disease
pcad05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    102973944
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    102973944
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    102973944
   04612 Antigen processing and presentation
    102973944
   04658 Th1 and Th2 cell differentiation
    102973944
   04659 Th17 cell differentiation
    102973944
   04672 Intestinal immune network for IgA production
    102973944
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    102973944
   05164 Influenza A
    102973944
   05168 Herpes simplex virus 1 infection
    102973944
   05169 Epstein-Barr virus infection
    102973944
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    102973944
   05152 Tuberculosis
    102973944
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    102973944
   05140 Leishmaniasis
    102973944
  09163 Immune disease
   05310 Asthma
    102973944
   05322 Systemic lupus erythematosus
    102973944
   05323 Rheumatoid arthritis
    102973944
   05320 Autoimmune thyroid disease
    102973944
   05321 Inflammatory bowel disease
    102973944
   05330 Allograft rejection
    102973944
   05332 Graft-versus-host disease
    102973944
  09166 Cardiovascular disease
   05416 Viral myocarditis
    102973944
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    102973944
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pcad04147]
    102973944
Exosome [BR:pcad04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   102973944
  Exosomal proteins of epithelial cells
   102973944
  Exosomal proteins of breast milk
   102973944
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 Ig_2 C2-set_2
Other DBs
NCBI-GeneID: 102973944
NCBI-ProteinID: XP_007118658
Ensembl: ENSPCTG00005005185
UniProt: A0A2Y9FB33
Position
18:complement(84578126..84583133)
AA seq 253 aa
MAIIGVPIPGFFITVLIGLQESWAITEDHVIIQAEFSLAPDQSSEFMFDFDGDEIFHVDL
EKKETVWRLKEFGNFASFQAQGALANIAVGKANLDILIKRSNHTPNTNVPPEVTVLSNTP
VELGEPNILICFIDKFSPPVINVTWLQNGKPVTTGVSETVFLPRDDHLFRKFHYLPFVPS
TEDVYDCKVEHWGLEEPLLKHWEYEAPTPLPETTENVVCALGLIVALVGIVIGTIFIIKG
VRKGNVVEHRGPL
NT seq 762 nt   +upstreamnt  +downstreamnt
atggccataattggagtcccaataccaggatttttcattaccgtcctgataggccttcag
gaatcatgggctatcacagaggatcatgtgatcatccaggctgagttctctctggcccct
gaccaatcaagcgagtttatgtttgactttgatggtgatgagattttccacgtggatttg
gaaaagaaagagacagtgtggcggcttaaagaatttggaaattttgccagctttcaggct
cagggtgcattggccaatattgctgtgggaaaagccaacctggacatcctgataaagcgc
tccaaccacaccccaaacaccaatgtacctccagaagtgactgtgctctcaaacacccct
gtggaactgggagagcccaacatcctcatctgtttcatcgacaagttttctccaccagtg
atcaatgtcacgtggcttcaaaatggcaaacctgtcaccacaggagtgtcagagacagtc
ttcctacccagggatgaccaccttttccgcaagtttcactacctccccttcgtgccctca
accgaggatgtctatgactgcaaggtggaacactggggtttggaggagcctcttctcaag
cactgggagtatgaagctccaacgcccctcccagagaccacagagaatgtggtgtgcgcc
ctgggcctgattgtggctctggtgggcatcgttattggaaccatcttcatcatcaagggc
gtgcgcaaaggcaacgttgttgaacaccgagggcctctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (24)   
   KEGG PATHWAY (24)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (39)   

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