KEGG   Physeter catodon (sperm whale): 102983303
Entry
102983303         CDS       T06011                                 
Symbol
PABPC5
Name
(RefSeq) polyadenylate-binding protein 5
  KO
K13126  polyadenylate-binding protein
Organism
pcad  Physeter catodon (sperm whale)
Pathway
pcad03015  mRNA surveillance pathway
pcad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102983303 (PABPC5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102983303 (PABPC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102983303 (PABPC5)
   03041 Spliceosome [BR:pcad03041]
    102983303 (PABPC5)
Messenger RNA biogenesis [BR:pcad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102983303 (PABPC5)
   mRNA cycle factors
    Stress granule specific factors
     102983303 (PABPC5)
Spliceosome [BR:pcad03041]
 Complex C
  Other components
   Complex C specific factors
    102983303 (PABPC5)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_occluded RRM_7 RRM_3 DUF4523 TC1 ATP-grasp_2
Other DBs
NCBI-GeneID: 102983303
NCBI-ProteinID: XP_007123134
Ensembl: ENSPCTG00005019361
UniProt: A0A2Y9FHB6
Position
21:67797979..67801256
AA seq 382 aa
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDATGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEEATKAVDE
MNGRTVGSKPLHVTLGQARRRW
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggggagtggggagcctaatcctgctggcaagaaaaagaagtacctcaaggctgccctg
tatgtgggtgacttggacccagatgtcaccgaggacatgttatataaaaagttcaggcct
gctggccctctgcgcttcacccgaatctgccgtgacccggtgacccgcagccccctgggc
tatggctatgttaacttccgctttcctgcggatgctgagtgggccttgaacaccatgaat
tttgatttgattaacggcaaacctttccgcctaatgtggtctcagccagatgaccgctta
agaaagtctggagttggaaatatattcatcaaaaacctggacaaatccatagacaatagg
gcccttttttatctgttttctgcttttgggagcattctctcctgcaaagtcgtatgcgat
gacaacggctctaagggttatgcctatgtgcactttgacagcctagccgctgccaatagg
gccatctggcacatgaatggagtgcggctcaacaaccgccaagtgtacgttggccgattc
aaatttccggaagagcgggcagctgaagttagaactagggatagagcgactttcaccaat
gttttcgttaaaaactttggagatgacatggatgacgacaaactgaaggaacttttcagt
gagtacgggccaactgagagtgttaaggtaataagagatgccactgggaaatcgaaaggc
tttggatttgtgagatacgagacacacgaggctgcccaaaaggctgtgttagacctgcat
ggaaagtccatcgacgggaaagtgctctatgtagggcgagcacagaagaaaattgaacgc
ctggctgagttaaggcgaagatttgagcggctgagattaaaagaaaaaagtcggcctcca
ggggtgcctatctatattaagaacctagacgagaccatcgatgatgaaaaactgaaggag
gaattttcttcctttggatcaattagccgggcaaaagtgatggtggaagtggggcaaggc
aaaggatttggtgtcgtctgcttctcctcttttgaagaggctaccaaagcagtagatgag
atgaatggtcgcacagtgggctccaagcctctgcatgtcacgctgggccaggccaggcgc
aggtggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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