KEGG   Physeter catodon (sperm whale): 102988826
Entry
102988826         CDS       T06011                                 
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
pcad  Physeter catodon (sperm whale)
Pathway
pcad03013  Nucleocytoplasmic transport
pcad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102988826 (THOC1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102988826 (THOC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102988826 (THOC1)
   03041 Spliceosome [BR:pcad03041]
    102988826 (THOC1)
Messenger RNA biogenesis [BR:pcad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     102988826 (THOC1)
Spliceosome [BR:pcad03041]
 Complex C
  Other components
   EJC/TREX
    102988826 (THOC1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102988826 (THOC1)
SSDB
Motif
Pfam: efThoc1 Death HsdM_N
Other DBs
NCBI-GeneID: 102988826
NCBI-ProteinID: XP_023976889
Ensembl: ENSPCTG00005018960
UniProt: A0A2Y9SME5
Position
19:35188339..35239060
AA seq 657 aa
MSPTPPLFSLPEARTRFTKSTREALNSKNIKPLLNTFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHMEDREEGMDVEEGEMGDDEVPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVVRKRTAPE
DFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGDQIEVFASKLGEQWKILAPYLEMKDSEIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtctcctacgccgccgctcttcagtttgcccgaagcgcggacgcggtttacgaaatct
accagagaggccctgaacagcaaaaatatcaagcccttgttgaatacgttcagccagtta
cctggaagtgaaaatgaaaaaaaatgtacccttgaccaagcttttagaggtgttctagaa
gaagaaattataaatcattcatcatgtgaaaacgttttagctattatttctcttgctatt
gggggagttactgaaggtatttgtacagcatctacaccttttgtattgttgggagatgtt
ttggattgccttcctttggatcagtgtgacacaatattcacttttgtggaaaaaaatgtt
gctacttggaaatcaaatacattctattctgctgggaagaattatttactacgtatgtgc
aatgatctcttacgaagattatcaaaatcccagaatacagtcttctgtggacgaattcag
ctctttttggccagacttttccctttatctgagaagtcaggtcttaacttgcagagtcag
tttaatctggaaaatgtcactgttttcaataccaatgagcaggaaagcacattgggtcaa
aagcacatggaggacagagaagaaggaatggatgtggaagaaggtgaaatgggggatgat
gaagttccaacaacttgctccattccaattgattacaacctgtaccgaaaattttggtca
cttcaggattactttaggaaccctgtgcaatgctatgagaaaatttcatggaaaactttt
ctcaagtattctgaagaagttctagctgtttttaagagttataaattagatgatactcag
gcctcaaggaaaaagatggaagaattgaaaacaggaggagagcatgtatattttgcgaag
tttttaacaagtgaaaagctgatggatttacaactgagcgacagtaactttcgtcgacac
atcctgttgcagtatctcattttattccagtatctcaaggggcaggtcaaatttaaaagt
tcaaactatgttttaactgatgagcaatcactctggattgaagatactacaaagtcagtt
tatcaactactatctgaaaacccccctgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaatgaaggctgcccaagttttgtg
aaagaaagaacatcagataccaagccgacaagagtagtacggaagagaacggctccagag
gacttcctagggaaaggacccaacaaaaaaattctgatgggaaatgaggagttaacaagg
ctttggaatctctgtcctgataatatggaagcctgtaaatcagagacaagggaatatatg
ccaactttggaggaattctttgaagaagccattgaacaggcagaccctgaaaacatggtt
gaaaatgaatacaaggctgtgaacaattctaattatggttggagagccctgagactatta
gcacggagaagccctcacttctttcagccaaccaaccagcagtttaaaagtttgccagaa
tatctcgaaaacatggtaataaagctagccaaggaattaccacctccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagataatgatgctttactgaaggaaaatgaaagt
cctgatgttcggcgagacaaacctgtaacaggggaccaaatagaggtatttgccagcaaa
ctgggtgaacaatggaagattctggctccctacttggaaatgaaagactcagaaattaga
cagattgagtgtgacagtgaagacatgaagatgagagctaagcagctgctagtcgcctgg
caggatcaggagggagtgcacgcgacacctgagaacctgatcaatgcactcaacaagtct
gggttaagtgaccttgcagaaagtctaactaatgacaatgagacaaatagttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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