KEGG T06011: 102988926

Physeter catodon (sperm whale): 102988926

Entry

102988926         CDS       T06011

Symbol

FXR1

Name

(RefSeq) RNA-binding protein FXR1 isoform X6

K15516

fragile X mental retardation protein

Organism

pcad Physeter catodon (sperm whale)

Brite

KEGG Orthology (KO) [BR:pcad00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102988926 (FXR1)
Messenger RNA biogenesis [BR:pcad03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102988926 (FXR1)
   Factors involved in mRNA localization
    Other mRNA localization factors
     102988926 (FXR1)
   mRNA cycle factors
    Stress granule specific factors
     102988926 (FXR1)

SSDB

Motif

Pfam:

FXMRP1_C_core FXR_C1 KH_9 Tudor_FRX1 FXR_C3 KH_1 Agenet KH_2 DUF150_C Tudor_2

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

Position

1:73925742..73982866

AA seq 677 aa
MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMGFRPSSTRGPEKEKGYATDESTVSSVQGSRSYSGRGRGRR
GPNYTSGYGTNSELSNPSETESERKDELSDWSLAGEDDRESRHQRDSRRRPGGRGRSVSG
GRGRGGPRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHSTNRRRRSRRRRT
DEDAVLMDGMTESDTASVNENGLDDSEKKPQRRNRSRRRRFRGQAEDRQPVTVADYISRA
ESQSRQRNLPRETLAKNKKEMAKDVIEEHGPSEKAINGPTSASGDEISKLQRTPGEEKIN
TLKEENTQEAAVLNGVS

NT seq 2034 nt +upstreamnt +downstreamnt
atggcggagctgacggtggaggttcgcggctccaacggggctttctacaagggatttatc
aaagatgttcatgaagactccctcacagttgtttttgagaacaattggcaaccggaacgc
caggttccatttaatgaagttagattaccaccaccacctgatataaaaaaagaaattagt
gaaggagatgaagtagaggtgtattcaagagcaaacgatcaagagccatgtggatggtgg
ttggctaaagttcgaatgatgaaaggagaattttatgtcattgaatatgctgcttgtgat
gccacttacaatgaaatagtcacgtttgaacgacttcggcctgtcaatcaaaataaaact
gtcaaaaaaaataccttctttaaatgcacagtggatgttcctgaggatttgagagaggcg
tgtgctaatgaaaatgcacataaagattttaagaaagcagtaggagcatgcagaattttt
taccatccagaaaccacacagctaatgatactgtctgccagtgaagcaactgtgaagaga
gtaaatattttgagtgacatgcatttgagaagtattcgtacgaagttgatgcttatgtcc
agaaatgaagaggccactaagcatttagaatgcacaaaacaacttgcagcagcttttcat
gaggaatttgttgtgagagaagatttgatgggcctggcaataggaacacatggtagtaac
atacagcaagctagaaaggttcctggagttacagctattgagctagatgaagatactgga
acatttagaatctacggcgagagtgctgatgctgtaaaaaaggctagaggttttttggaa
tttgtggaggattttattcaggttcctaggaatcttgttggaaaagtaattgggaagaat
ggcaaagttattcaagaaatagtagacaaatctggtgtggttcgggtgagaattgaagga
gacaatgaaaataaactacctagagaagatgggatggttccatttgtatttgttggcact
aaagaaagcattggaaatgtgcaagttcttttagagtatcatattgcttatctaaaggaa
gtagaacagctaagaatggaacgcctgcagattgatgaacagctacgacagattggtatg
ggtttcagaccttcttccaccagagggcctgaaaaagagaaaggatatgccactgatgaa
agtaccgtctcttctgtacaaggttctaggtcttatagtggaagaggcagaggtcgtcgg
ggccctaattacacctccggttatggtacaaactctgagctgtctaacccatctgaaact
gaatctgagcgtaaagacgagctgagtgattggtcattggcgggagaagatgatcgagag
agcaggcatcagcgtgacagcaggagacgcccaggaggaagaggcagaagtgtttcaggg
ggtcgaggtcgtggtggaccacgtggtggcaaatcttccatcagttctgtgctcaaagat
ccagacagcaatccatacagcttacttgataatacagaatcagatcagactgcagacact
gatgccagcgaatctcatcacagtactaaccgtcgtaggcggtctcgtagacgaaggact
gatgaagatgctgttctgatggatgggatgactgaatctgatacagcttcagttaatgaa
aatgggctagatgatagtgaaaaaaaaccccagcgacgcaatcgtagccgcaggcgtcgt
ttcaggggtcaggcagaagatagacagccagtcacagttgcagattatatttctagagct
gagtctcagagcagacaaagaaacctcccaagggaaactttggctaaaaacaagaaagaa
atggcaaaagatgtgattgaagagcatggtccttcagaaaaggcaataaatggcccaact
agtgcttctggcgatgaaatttctaagctacagcgtactccaggagaagaaaagattaat
accttaaaagaagaaaatactcaagaagcagcagtcctgaatggtgtttcataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (10)   
   Pfam (10)   
All databases (36)   

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