KEGG   Physeter catodon (sperm whale): 102994780
Entry
102994780         CDS       T06011                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
pcad  Physeter catodon (sperm whale)
Pathway
pcad03420  Nucleotide excision repair
pcad04120  Ubiquitin mediated proteolysis
pcad05161  Hepatitis B
pcad05170  Human immunodeficiency virus 1 infection
pcad05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102994780 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102994780 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    102994780 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    102994780 (DDB1)
   05161 Hepatitis B
    102994780 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pcad04121]
    102994780 (DDB1)
   03400 DNA repair and recombination proteins [BR:pcad03400]
    102994780 (DDB1)
Ubiquitin system [BR:pcad04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     102994780 (DDB1)
DNA repair and recombination proteins [BR:pcad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      102994780 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102994780 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 102994780
NCBI-ProteinID: XP_007106278
Ensembl: ENSPCTG00005020159
UniProt: A0A2Y9EPF4
Position
Unknown
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QDPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSSGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCRLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcacagaagcccaccgccgtgaacggctgcgtgacc
ggacactttacttcagctgaagacttgaacctgttgattgccaaaaatacgagattagag
atctatgtggtcactgctgaggggcttcggcccgtcaaagaggtgggcatgtatgggaag
attgctgtcatggagcttttcaggcccaagggggagagcaaggacctactgtttatcctg
acagctaagtacaatgcctgcatcttggagtataagcagagtggcgagagcattgacatc
ataacgcgagctcatggcaatgtccaggaccgaatcggccgcccctcagagacgggcatt
atcggcatcattgaccccgagtgccgaatgattggcctgcgactctatgatggccttttc
aaggttattccactagaccgggacaataaagagctcaaggcctttaacatccgcctggag
gagttgcatgttattgatgtcaagttcctgtatggttgccaagcacctaccatctgcttt
gtctaccaggaccctcaggggcggcacgtgaaaacctatgaggtgtctctccgagagaag
gagttcaacaagggcccttggaaacaggaaaatgtagaagctgaagcttccatggtgatt
gcagtcccagagccttttggaggcgccatcatcattggacaggaatcaatcacctatcac
aacggtgacaaatatctggcgattgcccctcccatcattaagcaaagcacaattgtgtgt
cacaatcgcgtggaccccaatggctcccgctatctgctgggagacatggaaggacggctc
ttcatgctgcttttggagaaggaggaacagatggatggcaccgtcaccctcaaggatctc
cgagtggaactccttggggagacctctattgctgagtgcttgacataccttgataacggt
gttgtgtttgtcgggtctcgccttggtgactcccagcttgtgaagctcaatgttgacagc
aatgaacaaggctcctatgtagtggccatggaaacctttaccaatttaggacccattgtg
gacatgtgtgtggtggacctggagaggcaggggcagggacagctggtcacttgctctggg
gctttcaaggaaggctccttgcggatcatccggaatggaattggaatccacgagcacgcc
agcattgacttgccaggcatcaaaggcctatggcccctgcggtctgatcctaatcgggag
actgatgacactttggtgctctcttttgtgggccagacaagagttctcatgttaaacgga
gaggaagtggaagaaaccgaactgatgggttttgtggacgatcagcagactttcttctgt
ggcaacgtcgctcatcaacaactcatccagatcacttcagcatctgtgaggttggtctct
caagaccccaaagctctcgtcagtgagtggaaggagcctcagggcaagaacatcagtgtg
gcctcctgcaatagcagccaggtagtggtagccgtgggaagggccctctactacctgcag
atccatcctcaggagctccgacagatcagccacacagagatggaacacgaagtggcctgc
ttggacatcacccctttaggggacagcagtggaatgtctcctctctgtgctattggtctc
tggacagacatctcagcccgaatcgcgaagctgccctcttttgagctactgcacaaagag
atgctgggtggagagatcattcctcgttctatcctgatgaccacctttgagagtagccac
tacctcctttgtgccttgggagatggggcgcttttctactttgggctcaacattgagaca
ggcctgttgagcgaccgtaagaaggtgactctgggcacccagcccaccgtattgaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaaattggtcttctccaatgtcaacctcaaggaggtgaactacatgtgt
cccctcaactcagatggctaccctgacagcctggcactggccaacaacagcaccctcacc
attggcaccattgacgagatacagaagctgcacattcgtacagttcccctctacgaatct
cccaggaagatctgctaccaggaggtgtcccagtgcttcggggtcctctccagccgtatt
gaagtccaggacacgagtgggggtacaactgctctgaggcccagcgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttctccagcagcacagcccctcacgagacc
tcctttggagaagaggtggaggtgcataacctccttatcattgaccagcacacctttgaa
gtgctccacgcccaccagttcctgcagaacgagtatgccctcagcctggtctcctgcagg
ttgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtaccctgaagag
gcggagcccaagcagggtcgtattgtggtctttcagtattcagatggaaaactacagact
gtggctgaaaaggaggtgaaaggggctgtgtactctatggtggaatttaacgggaagttg
ttagccagcatcaacagcacggtgcggctttacgagtggacgacggagaaggagctccgc
accgagtgcaaccactacaacaacatcatggccctgtacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctcggtgctgctgctggcctacaagcccatggagggc
aacttcgaagagattgctcgagactttaaccccaactggatgagtgctgtggaaatcttg
gatgatgacaatttcctgggggctgaaaatgcctttaacttgtttgtgtgtcagaaggat
agcgctgccaccactgacgaggagcggcagcacctccaggaggttgggctcttccacttg
ggcgaatttgtcaacgtcttttgccacggctctctggtcatgcagaatctgggcgagacc
tccacccctacacagggctcggtgctcttcggcacggtcaacggcatgattggcctggtg
acctcactgtcagagagctggtacaacctcttgttggacatgcagaatcgactcaataaa
gtcatcaaaagtgtgggcaagattgaacactccttctggagatcctttcatactgaacgg
aagacagaaccagccacaggcttcatcgatggggacttgattgagagtttcctggacatc
agccggcccaagatgcaggaggttgtggcaaacctgcagtatgacgatggcagcggaatg
aagcgagaagccaccgcggatgacctgatcaaggttgtggaggagttaactcggatccat
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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