KEGG   Paraburkholderia caffeinilytica: DSC91_007081
Entry
DSC91_007081      CDS       T06448                                 
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
pcaf  Paraburkholderia caffeinilytica
Pathway
pcaf03030  DNA replication
pcaf03430  Mismatch repair
pcaf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pcaf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSC91_007081
   03430 Mismatch repair
    DSC91_007081
   03440 Homologous recombination
    DSC91_007081
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcaf03032]
    DSC91_007081
   03400 DNA repair and recombination proteins [BR:pcaf03400]
    DSC91_007081
Enzymes [BR:pcaf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DSC91_007081
DNA replication proteins [BR:pcaf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     DSC91_007081
DNA repair and recombination proteins [BR:pcaf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     DSC91_007081
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 AAA DNA_pol3_tau_5 RuvB_N AAA_16 AAA_22 AAA_14 AAA_5 TsaE AAA_18 Mg_chelatase AAA_2 AAA_assoc_2 DUF3646 AAA_24 Glyco_tranf_2_5 nSTAND3
Other DBs
NCBI-ProteinID: AXL53585
Position
2:3961221..3963923
AA seq 900 aa
MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK
ALNCETGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF
KVYMIDEVHMLTNHAFNAMLKTLEEPPSHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA
GHIVSHLEHILGEESVPYDAQALRLLARAADGSMRDALSLTDQAIAYSANQVNEDAVRGM
LGALDQSYLIRLLDALADGDGAAVLAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPS
SVLDEWPEAGDLRRFAEALSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRMLAFEP
APTGGGGTAAARAAGPAGAGGAKRAGSPAVAAQQAVAPSRAVDAAAAAPVRSVNPVAEAK
PATPGSQHPALAGAAESADTPKPTMGAAAIVPSSATAVASAPGFASGEADAASTPAAANV
VAAPALAPWQEEPSIEPNLSDSAPAGASAPRAAPTPEAMSPAPAIETVEATEATEAIKVA
SAPALAPWDDVPAEPAPSESLAVVAPDESATAPSLGAPATAIAAAIARTEEPAPIAASQE
QPSAADIPPRRAGGASDALNVLRSAGLKVSSDRGRATAAASAARPAAAPAAPKPAAPRVV
VNVPTPGAPRRAPQQDAAPAARAPSPQAQEPNGSSSAPWDDMPPDEYMPLTAADEGYYGL
PDDNYMPVFDSGPDDVRVTAAPAPTPAPVVDKRPLPPAVPLDPLGFQGDWPALAVDLPLK
GISYQLAFNSELMALEGSTLKLNVPVPQYAEASQVAKLKAALAEKLGQNVDVLVEVGPAR
RTAAAHDAAMRAQRQQEAEREIGADPFVQSLIREFGASIVPGSIRPITQDAGPNGAPSAH
NT seq 2703 nt   +upstreamnt  +downstreamnt
atgacctatcaagttctcgcacgcaaatggcggccgaaggattttgcttcgctcgtcgga
caggagcacgtggtgcgcgcgctcacgcacgcgctcgacggtggccgtctgcatcatgcc
tatctgtttaccggcactcgcggcgtcggcaaaaccacgctgtcgcgcatctttgccaag
gcgctgaattgcgaaaccggtgtgacttccaccccgtgtggcgtgtgccgcgcgtgccgc
gagatcgatgaaggccgcttcgtcgactatgtcgagatggacgcggcgagcaatcgcggc
gtcgacgagatggcggcgctgctggagcgagcggtttatgcgccggtcgacgcgcgcttc
aaggtctacatgatcgacgaagtgcacatgctgaccaaccacgctttcaacgcgatgttg
aagacgctggaagagccgccttcgcacgtcaaattcattctcgccacgaccgatccgcag
aagatcccggtcacggtgctgtcgcgctgtctgcagttcaatctgaagcagatgccggcg
gggcacatcgtgtcgcatctcgagcacattctcggtgaagagagcgtgccgtacgacgcc
caggcattgcgcctgctcgcgcgcgcggccgacggctcgatgcgcgacgcgctctcgctg
accgatcaggcgatcgcctattcggccaatcaggtgaatgaagacgcggtgcgcggcatg
ctcggcgcgctcgatcaaagctatctgattcgcctgctcgacgcgctggccgacggtgac
ggcgctgccgtgctggcggtcgccgacgagatggcgttgcgcagcctgtcgttttcgacg
gcgctgcaggatctggcgagcttgttgcaccgaatcgcgtgggcgcagttcgcgccgtcg
tcggtattggacgagtggcctgaagcgggagatctgcgtcggtttgccgaggcgttgagc
gccgagcaggtacagttgttctatcagatcgccacgatcggccgaagcgaactgggtctc
gcgcctgatgaatacgccggtttcacgatgacgctgttgcgcatgctggcattcgagccg
gcgcccaccggtggcggcggtacggctgcggcacgggcggcagggccggcgggggcgggt
ggcgcgaagcgcgccggctcgccggcggtcgctgcgcaacaggcggtggcgccgtcgcgt
gcggttgacgcggcggccgcggcgccggtgcgctcggtcaatccggtagcagaagcaaag
cccgcgacgcccggctcgcagcaccctgcgctcgcgggggctgcggaaagtgcggacacg
ccgaagccaactatgggtgcggcggcaatcgttcccagctctgcgaccgctgttgcatcc
gcacccgggttcgcctcaggcgaagcggacgcggcgtccacgcctgcagcggccaacgtc
gtcgccgcaccggctttggcgccgtggcaggaagagccatcaatcgagccgaatttgagc
gattcggcgcctgcaggcgcgagcgcgccccgagcggctccgacgcccgaggcgatgtcc
ccggcgccggcgatcgaaacggtcgaagcaaccgaagcaaccgaagcaatcaaagtagcg
agcgccccggccttggccccatgggacgatgtgcccgccgagccagccccgagcgaatca
ctcgctgtggttgctcctgatgaatcagcgaccgcgccttcgctcggcgctccggccaca
gccatagcagccgccattgcgcggacagaagagcccgcacccatagcggcatcgcaagag
cagccatccgcagccgacatcccgccgcgccgcgcaggcggcgcgagcgacgcgctcaat
gtattgcgcagcgccggcctgaaagtgtcgtcggatcgtggccgcgctaccgcggcggct
tccgccgccaggcccgctgcagccccggccgcgccgaagccggccgcaccgcgcgtggtc
gtcaatgtgccgacgccgggcgccccgcgccgcgcgccgcagcaggacgccgctcctgca
gcgcgtgcgccgtcgccgcaggcccaggagccgaacggctcgtcgagcgcgccgtgggac
gacatgccgccggatgaatacatgccgctcacggcagcggacgagggctattacggcctg
ccggacgacaactacatgccggtgttcgacagcggacccgacgacgtccgcgtgaccgcc
gcgcctgcgccgacacccgcgccggtggtcgacaagcggccgttgccgcccgccgtgcca
ctcgatccgctaggtttccagggcgactggcccgcgctcgccgtcgatctgccgctcaag
ggcatttcgtatcagctcgccttcaacagcgaattgatggcacttgaaggcagcacgctc
aaactgaacgtgccggtgccgcaatacgcggaggcctcgcaggtcgctaaactgaaggcc
gcgctcgctgaaaagctcggccagaacgttgacgtgctggtcgaagtcggtccggcacgc
cgcacggcggccgcgcacgacgccgccatgcgcgcccagcgccagcaggaagcggagcgc
gaaatcggcgccgatccgttcgtgcagtcgctgatccgcgagttcggcgcgagcatcgtg
cccggttcgatccgcccgattacgcaggacgccggcccgaacggcgcgccgtctgcccac
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (18)   
   Pfam (18)   
All databases (29)   

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