KEGG   Porphyromonas cangingivalis: NCTC12856_01575
Entry
NCTC12856_01575   CDS       T06514                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pcag  Porphyromonas cangingivalis
Pathway
pcag02020  Two-component system
pcag02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pcag00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    NCTC12856_01575
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    NCTC12856_01575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcag03021]
    NCTC12856_01575
Transcription machinery [BR:pcag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NCTC12856_01575
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID Crp HTH_Crp_2 HTH_21 LacI
Other DBs
NCBI-ProteinID: VEJ04236
Position
1:1806545..1808002
AA seq 485 aa
MAEHTGTLKQKLSQRLSTRQVQLMQMLTLPVTELEQRIKEELEDNPALEEGTDLQDAEIP
DNGLDDGSALTEAEMILGDYADIDDVPDYKLRQIERSSGVSPSDIPFADEESLQENLRAQ
LLLTSLSEDERRVAEFIIGSLDDDGILRRDPESLMDDLAIYHSIYINEDELAHIESVLRT
LDPPGVASRSVQGCLLAQLDRRQDPSPATRLAREIIADHFDLFASKAYDKLRTLLDVDDE
ELRQAIKIITRLNPSPGLDYTGRLQDNLSIIIPDFVVTEQEGTLVVSLNHSDIPDVRVSR
EFTDRMKDYTGDLRKVDRGSREAAKFVKQKIDDARWFVDMIHQRNTTLLSTMTAIVDKQR
EYFLTGDLALLRPMILKDIADLIGADISTVSRVTSTKYVQTDFGVFPLKYFFSESATTDD
GEEVSTHRVRELIAELIANEDKTHPINDDQLTERLKEEGFIVARRTVAKYRDRLGIPVAR
LRKEI
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcagagcacacaggtacactcaagcaaaagttatcccaacgcctctccacacggcag
gtgcagctcatgcagatgctcaccctccccgtcacggagctggagcagcgtatcaaggaa
gagctcgaggacaatccagctctcgaagagggtacagatcttcaagatgccgaaatcccc
gacaatggtctcgatgacggaagtgccctcaccgaagcggagatgatccttggcgactat
gccgacatcgacgacgtcccggactacaagctcaggcagatagaacgctcgtccggggtc
tctccctctgacatcccctttgcggacgaagagtccttacaggagaatctccgtgcacag
ctcctcctcacctccctttctgaggacgagcgcagagtggctgagttcattatcggcagt
cttgacgatgacggtatcctccgtcgtgatcccgagagccttatggatgatcttgcgatc
tatcattccatatacattaacgaggacgaactggcacacatcgagtctgtcctacgcacc
ctcgatcctcccggtgtcgcttcgcgcagtgtgcagggatgtctattggcacagcttgac
agacggcaagacccatcgcctgccactcgacttgcacgagagatcatcgccgatcacttc
gacctctttgcctccaaggcctacgacaagctccgcaccctcctcgatgtcgacgacgaa
gagctacggcaggccatcaagatcatcacacgactcaatccctctccgggactcgactat
accggccgtcttcaggataatctcagcatcatcatccccgacttcgtcgtcaccgagcaa
gaggggactctcgtcgtctctctcaatcactccgacatccccgatgtccgagtcagccga
gagttcaccgatcggatgaaggactacaccggagacctccgcaaggtcgacagaggcagt
cgtgaggccgccaagtttgtcaagcagaagatcgacgatgctcggtggtttgtggacatg
atacaccagcgcaatacgaccctcctctccaccatgaccgccatcgtcgacaagcagagg
gaatacttcctcaccggagatcttgccctcctgcgtcccatgatcctcaaggacatcgct
gacctcatcggggcggatatatccacggtctcacgtgtgacttcgacaaagtatgtgcag
acagacttcggtgtctttccgctcaagtacttcttctccgagtccgctaccaccgatgac
ggcgaagaggtatccacacaccgagtgcgcgaactcattgccgaactcatcgccaacgag
gacaagacccatcccatcaacgacgatcagctcaccgaacgcctcaaggaagaaggtttc
atagtcgctcgccgtaccgtcgccaagtaccgtgatcgtctcggtatccccgtcgcaaga
ctccgcaaagagatctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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