KEGG   Pomacea canaliculata (golden apple snail): 112556540
Entry
112556540         CDS       T05881                                 
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pcan  Pomacea canaliculata (golden apple snail)
Pathway
pcan03008  Ribosome biogenesis in eukaryotes
pcan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcan00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    112556540
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112556540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcan03019]
    112556540
   03009 Ribosome biogenesis [BR:pcan03009]
    112556540
   03016 Transfer RNA biogenesis [BR:pcan03016]
    112556540
   03036 Chromosome and associated proteins [BR:pcan03036]
    112556540
Messenger RNA biogenesis [BR:pcan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112556540
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     112556540
Ribosome biogenesis [BR:pcan03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    112556540
Transfer RNA biogenesis [BR:pcan03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    112556540
Chromosome and associated proteins [BR:pcan03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    112556540
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 LIX1 DUF3926
Other DBs
NCBI-GeneID: 112556540
NCBI-ProteinID: XP_025081422
Position
LG2:1565057..1599793
AA seq 1926 aa
MGVPKFYRWISERYPCLSEVVKEFELPEFDNLYLDMNGIIHTCSHPEDDNPHFRITEEQI
FKDICHYIEFLFRMIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAREAEELIKKAQERGE
TLPAEKRFDSNCITPGTPFMVRLQEHLKYFVIDKISNDPLWQGPQVYLSGHETPGEGEHK
VMDFIRYSRSQPGYDPNTRHCLYGLDADLIMLGLTSHEPHFALLREEVKFGGRKDKNKRP
VTPEETTFHLLHLSLLREYIDYEFSSLRTKLPFEYNVENIIDDWIMMGFLVGNDFIPHLP
HLHIHHDALPMLWDKYKDVLITLDGYLNEGGHLNLKRFQVYVTALAKFDREHFSEQFVDM
KYLEGKRGSGGGAAAEGDAHSSKKIKQSSITCKKKSGEGAEALSLLEDQLEADGSCDTDS
ATEQLSADLLAVDIDSSDDDFDTFDAEFRAHKRDYYITKLEYEDVTPEVLKEQAAGYVQA
IQWILLYYYEGVQSWNWFYPHHYAPYISDLHNFSNLQISFDMSEPFKPFEQLMAVLPAAS
KDLLPEPLQELMTAENSPVVDYYPDKFKTDLNGKQQDWEAVVLIPFIDEEKLLSAMRTRE
HLLTSEEQRRNTHGPCYLYQYISEPQGLYPSSMPSSFPDVAVSHAKVCHFSKFHFCLEPN
KIKKGLLPNVLMDVYFPGFPTLKNIPHEAYLEKASVKVFQHNSRGFSMMLQIKDIPERKL
EDVAEELLGKSTFVGWPHLHEAKVHAVADEQYKIEIVEHHKKGSPMEVQWKRHIVSQSER
EILYKQASSIKDRYRDRFGVVIGNTTVLVFASTMTGRRYVHTSHGQITAEKQFSTHQQPY
ALQATCKDVLVHAPDDMHFRTLDELFPAGAQVFMLGNPNYGSQGEVQETDMKEGRVRVLF
TLFLEPDMSEVAYSSQEGQYMPAYIAAQRSGLNTHLLSRITGTILTVRGDGGNPDSRANI
GLNLKFSKRGEELPGYTKKTEDRWMYSEKAVETVGAYLEEFSELWDYIAQSQTGSSDLYT
EVELFPEGSKKSLKDVLKYLEQLPCRSVQPIKSGAQILEEATVQIIEKTVDSLKQKQKQK
KVKMLVKPHLLFRPLPNQGSLEPDPGTNYQLYDRVVVVKVGYSVPFGLRGTVIGIHQGDK
QSDISCDVVFDEEFAGGFPLRCSKNRGYRVPGIAMLNLTYGEHRKYKHSSQQNPAQQAWQ
QKPAFFSSHGNKQQQQIGSYSGLQQLQSQARASSLQRSAFNGYPSQNQPQFVMPKVSGQK
PGLLVKSPQILTGKPPVVKQQSSVEDNEFANMWKVLQNARTSGETQTVGGKFSSSESVMS
NTSPRSSKPHSETDNAKSEMPNTGLSNVSLQSAAQALGKIPLPTLDSLEEAETSAVKNTT
ADPTTDLLVDLSDGTESKSQVCTVVDQTSACSIVPADSHCIELKGLVSAVGSGGVNVMQG
QTPSVAALFQQVQKSSSALPPLPWEFAPHQVQELPAAVDQSAALKQMLKIGIKETTTEVP
MSSHAEDNNKKSYGKQLSVQELFDGAKQASTQSSEAALPAKPLHQEIPQHPHQQHAPSLQ
PLLATPPLLATPSSQNRPRTHVTELASLMTTAGQVPPTYNFNYIAKQKGYIGYVRFLGGA
CFEGSLCPSKEEAAESAASMAMLHLRNNLLSHLGQQWISPQRIMRPSAAPRFFSPKSAFS
PVPPMMHLGPGMFPKVPPPGFPRGTFLSQLPPPPHSINRAQRPFMNPQQPNSVSPFNQGT
QWPTGQCQQLQVTLASGQSHSAVGANHCLPSEPQSTAQVETDRKTAGQEVGTCEQQGQEP
TTRKASSSKTSSTEAFIPLQVTKKQRRKDDAAERTDSSNNCETDATGLSPSYIPREGASR
SQKADGLVQDSGLGSETPGVPNTPGRHKKNSAGGSGGKAAMAKDRTLSGSGNKRRSRIAA
NFNSSN
NT seq 5781 nt   +upstreamnt  +downstreamnt
atgggagtacctaaattttacaggtggatcagtgaacggtatccctgtctcagtgaagtt
gtgaaagaatttgaacttccagaatttgacaacctgtatttggacatgaatggcatcatc
catacgtgttctcacccagaagatgataacccacatttcagaatcacagaagaacaaatt
ttcaaggatatctgtcattacattgagttcctctttcgcatgatcaagcctagaaaagtc
ttttttatggctgttgatggagtggctccaagggccaagatgaaccaacaaagaggccga
cgcttcaggtcagctcgtgaagctgaggagttgatcaagaaggcacaagaaaggggagaa
actttgccagcagagaaaagatttgattccaactgcatcacaccaggtactcctttcatg
gtgcgcttgcaagaacacctgaagtactttgtgattgacaaaatctcaaatgatccactt
tggcaaggtccacaagtctatctttcaggccatgagactccaggggaaggggagcataag
gttatggactttattcgttattcacgatctcaaccgggctatgaccccaacacacgacac
tgtctttatggcttggatgcagacttgatcatgctgggtttgacatcacatgagccacac
tttgcacttttgcgagaggaagtgaaatttgggggaagaaaagacaaaaacaaaagaccg
gtcactcctgaggaaacaacatttcatctgctgcatttgtctttgttgagagagtacatt
gactatgaattttcctcccttcggaccaaactgccatttgaatacaacgttgagaacatc
attgatgattggatcatgatggggtttttggtgggcaatgattttattcctcacttgcca
cacttacatattcaccatgatgctttacccatgctctgggacaaatataaagacgttctg
attaccctagacggctacttgaatgagggtggccacctaaatttgaagcgcttccaagta
tacgtaacagctcttgcaaaatttgacagggaacacttcagtgagcagtttgtagacatg
aaatacctggagggaaaaagaggtagtggtggtggtgcggcagcagaaggtgatgcacac
agtagcaagaagataaagcagagtagcatcacatgcaagaaaaaatctggtgaaggtgca
gaggctttgtcattgttggaggatcagttggaagctgatgggagctgtgatactgacagt
gccactgaacagttgtcagctgaccttctggctgttgacattgacagctcagatgatgat
tttgacaccttcgatgctgagtttcgtgcccataaaagagattactacataacaaaatta
gagtatgaagatgttacaccggaggtgttgaaagaacaagctgctggttatgtgcaagca
atccagtggatcctcctgtactattatgaaggggttcaatcctggaactggttctacccc
catcactatgcaccttacatcagtgacttgcataacttcagcaatttgcaaatttctttt
gatatgtctgagcccttcaagccatttgaacagctgatggctgtcctgcctgctgctagc
aaagatctcttgcctgaaccattgcaagagctaatgactgcagagaactcccctgtggta
gactattatccagacaaatttaagactgacttaaatggcaagcagcaggattgggaggct
gttgtcctcattccatttattgatgaggagaaacttctttcagccatgcgtacaagggaa
catcttttaacatccgaagagcagcggcgaaacacgcatggaccatgctatctataccag
tacatttcagagccacagggcttgtatccctcttccatgccatcttcgtttcctgatgtg
gcagtcagtcatgccaaggtgtgtcacttttccaagtttcacttctgtctggagccaaat
aagatcaagaaaggtctcctgcctaatgttctgatggatgtctattttccaggctttccc
accctgaaaaatataccccatgaagcatatctggagaaggcttcagtaaaggtctttcag
cataacagtcgcggcttcagcatgatgctgcagatcaaagacatacctgagaggaaactt
gaagatgtagctgaggaactgctgggcaagtcaacttttgtaggatggccacatcttcat
gaagctaaagttcatgctgtggcagacgagcaatacaagatagaaatagttgaacaccat
aagaaaggaagtccgatggaagttcaatggaagcgccatattgttagccagtcagagagg
gagattctgtacaagcaggcaagcagcattaaagacagatatcgagatcgatttggtgtg
gtgattggcaacacaacagttcttgtctttgcatccactatgacaggaagaaggtatgtg
cacacctcacatggacaaatcacagcagaaaaacagttcagcacacatcaacagccttat
gctctacaagcaacctgcaaggatgtgctggtccatgctccagacgacatgcatttccgt
acccttgatgagcttttcccagccggtgcacaagtctttatgcttggtaatcctaactat
ggttctcagggagaggtccaggaaacagacatgaaggagggtcgagtgcgagtactgttc
acactgtttctggagcctgacatgagtgaagtggcatattcaagccaggaaggacagtac
atgccagcttacattgcagcccagcgatctggcctgaatacacaccttctgtctcgcatt
acgggaacgatccttactgtacgtggggatggtggcaacccggactcacgtgctaacatt
ggtctcaatctgaaattctcaaagcgaggtgaagaacttccagggtacacaaagaaaaca
gaagatagatggatgtattctgagaaggctgtggagacagttggtgcatacttggaagag
ttttctgagttatgggactacattgcccaatcccagacaggcagcagtgatttgtatact
gaagtagagctcttcccagaaggaagcaagaagagtctgaaggatgttctgaaatacctt
gagcaattgccctgccgatctgtgcagccgataaagtcaggagcccagattctggaggaa
gcaacagtacagatcattgagaaaactgtggatagcttgaagcagaagcaaaagcagaag
aaagtgaagatgctggtgaagccacacctattgtttcgacccttgcccaaccaaggctcc
ttggagccagaccctggcacaaattaccagctgtatgaccgagtggtggtagtgaaggtg
ggatattctgtgccatttggattgcggggaaccgtcattggcattcatcagggagacaaa
cagtctgacatcagctgtgacgttgtctttgatgaggagtttgctggaggatttcccttg
agatgttccaaaaatcgtggctaccgtgtcccaggtattgcaatgctaaatcttacctat
ggagagcatcgtaagtataaacactccagccaacagaatcctgcacaacaggcttggcag
cagaaacctgcattcttcagtagccatggtaacaagcagcagcagcagataggaagttat
tctgggttgcagcagctacagagtcaggcaagagcaagctcacttcagagatcagcattc
aatggatacccatcccagaaccagccacagtttgtcatgcccaaagtcagtggacagaaa
ccaggtcttctggtaaagtctcctcagatactcacaggaaaacctcctgtggtcaagcag
cagagcagtgttgaagacaatgagtttgccaacatgtggaaggttctccaaaatgcaaga
acttctggagaaacccagactgttggaggcaagttttcttcgtctgaatcagtgatgtca
aacacaagcccaaggtcgtcaaagcctcattcagagacagataatgcaaaatcggaaatg
ccaaacacaggactttcaaatgtgtcgctccagtcagcagctcaagctttgggaaagatc
cctttgccaactttagactcgctggaagaggcagaaactagcgctgttaagaataccaca
gcagatcccacaacagacctcctggtggatctgtctgatggcacagaaagtaaatcacaa
gtttgtactgtggttgatcagactagtgcctgcagcattgttcctgcagattcccattgt
attgagctgaaaggccttgtgtctgcagttggtagtggtggtgtcaatgtgatgcaggga
cagactccttctgtggcagctttatttcaacaagtgcagaagtcatcatcagcattacca
ccattgccatgggaatttgcgccacaccaagtgcaggaactgcctgctgctgtggatcag
agtgctgcactgaaacaaatgttgaagattggcataaaggagacaacaacagaagtgcct
atgtcctcacacgcagaagacaacaacaaaaagtcctatggaaaacagctctcagttcag
gaactttttgatggtgcaaagcaagcctcaacacaatcatcagaagcagctctacctgca
aaacctctccaccaggagattcctcaacatccacatcaacagcatgccccatctctgcag
ccattattagcaactccaccacttcttgctactccttcaagccagaacagaccaaggacc
catgtcacagagctggcatccttgatgactactgctggtcaggtgccacctacatataac
tttaactacattgccaaacagaaaggctacattggctatgtgcgcttccttggtggtgca
tgttttgaagggtccctctgtcctagcaaagaggaggcagcagagagtgccgccagcatg
gccatgttgcatttgagaaacaacctgctcagtcatcttggacaacagtggatcagccca
cagcgcattatgcgcccatctgctgctcctcgtttcttctccccaaagtctgcgttcagt
cctgtgcctcccatgatgcaccttggtcctggcatgtttcccaaggttcctcccccagga
tttccaaggggcacattcctgtctcaactaccgccacccccacattctatcaacagagct
caaaggccattcatgaacccacagcaacccaactctgtgtctccgtttaaccaggggacc
cagtggccaacaggtcagtgccagcaactgcaggtcaccttggctagtgggcaatcccac
tctgcagtaggagcaaatcattgtcttccttcagagccacaatccacagcacaggttgaa
acagacagaaaaactgctggccaggaggtggggacatgtgaacaacagggtcaagaacct
acaaccaggaaagcctcctcatcaaaaacatcttccacagaagcattcataccactacag
gttaccaagaaacaaagacggaaagatgatgcagcggagagaacagattccagtaacaac
tgtgaaacagatgctactggtctgtccccttcctacataccaagggaaggggcttctcgt
tctcaaaaagcagatggcttagtacaagattctggcctaggcagtgaaacaccaggagtt
ccaaatactccaggcagacacaagaaaaacagtgcaggtggaagtggggggaaagcagcc
atggctaaagacaggacactctctgggtcaggaaataaacgccgttctcgtattgcagcc
aatttcaattcttccaactga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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