KEGG   Pseudoalteromonas carrageenovora: PC2016_3282
Entry
PC2016_3282       CDS       T06565                                 
Name
(GenBank) DNA-binding protein HU-beta
  KO
K03530  DNA-binding protein HU-beta
Organism
pcar  Pseudoalteromonas carrageenovora
Brite
KEGG Orthology (KO) [BR:pcar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcar03032]
    PC2016_3282
   03036 Chromosome and associated proteins [BR:pcar03036]
    PC2016_3282
   03400 DNA repair and recombination proteins [BR:pcar03400]
    PC2016_3282
DNA replication proteins [BR:pcar03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    PC2016_3282
Chromosome and associated proteins [BR:pcar03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    PC2016_3282
DNA repair and recombination proteins [BR:pcar03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      PC2016_3282
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_1 HU-CCDC81_euk_2 HU-DNA_bdg HYPK_UBA
Other DBs
NCBI-ProteinID: QBJ73463
Position
II:complement(123062..123337)
AA seq 91 aa
MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAARTG
RNPQTGAEIQIAAATIPSFKAGKGLKDQVNP
NT seq 276 nt   +upstreamnt  +downstreamnt
atgaataaagctcaattagttgaaaaaatcgctactgatgcagaaatctctaaagctgct
gctacacgtgcacttgacgcgtttactggcgctgtaacttcttctttaaaagaaggtaat
tcagttgcattagttggttttggtactttctcagttaaagaacgtgcagcacgcactggc
cgtaacccacaaacgggtgctgagatccaaatcgcagcggcaactatcccaagctttaaa
gcaggtaaaggtcttaaagaccaagtaaacccttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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