KEGG T03201: EY04

Pseudomonas chlororaphis PA23: EY04_05990

Entry

EY04_05990        CDS       T03201

Name

(GenBank) RNA polymerase-associated protein RapA

K03580

ATP-dependent helicase HepA [EC:5.6.2.-]

Organism

pch Pseudomonas chlororaphis PA23

Brite

KEGG Orthology (KO) [BR:pch00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pch03021]
    EY04_05990
Transcription machinery [BR:pch03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     EY04_05990

SSDB

Motif

Pfam:

RapA_C Tudor_1_RapA Tudor_RapA Helicase_C SNF2-rel_dom ResIII DEAD

Other DBs

NCBI-ProteinID:

AIC18456

UniProt:

A0A3G7TJ26

Position

complement(1346381..1349227)

AA seq 948 aa
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DTITHFEGWKMTVREVDDVDGLLVYHGLNGQNEVVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
ANPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPEYALVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDK
GRLSPEAHKTIHNFLGNEGEALLAAVNEGDSEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSP
QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGEWQALIDEARTERERLE
AELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSDNAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSARVAF
ETLNDQLESVPRASANKFIQAQRDQLTPKINAGEAKIAPRHAERVAEAQRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRVLVAG

NT seq 2847 nt +upstreamnt +downstreamnt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagccgagctaggt
ctaggcaccgttctggcacaggacggccgcttgctgaccgtgctctatccggccactggc
gacactcgccagtatgcgctacggaatgcgcccctcactcgcgtgaggttttccccgggt
gacaccatcacccacttcgaaggctggaagatgaccgtgcgcgaagtcgacgacgtcgat
ggcctgctggtctaccacggcctcaacgggcagaacgaagtcgtcaccctgccggaaacc
caactctcgaacttcatccagttccgtctggccagcgaccgtctgttcgccgggcagatc
gacccgctggcctggttctccctgcgctaccacaccctggaacacaccagccgccagctg
cagtcgtcgctgtgggggctgggtggcgtacgcgcccagccgatcgcccaccagttgcac
attgcccgtgaagtcgccgaccgtatcgcgccgcgggttctcctggcggacgaagtgggc
ctgggcaaaaccatcgaagccggcctggtgatccatcgccagctgctgtcgggccgcgcc
agccgcgtgctgatcctggtcccggaaaacctgcagcaccagtggctggtggaaatgcgc
cggcgcttcaacctgcaggtcgcgctgttcgacgaagaacgttttatcgaaagcgatgcc
gccaaccccttcgaggacacccagctcgccctggtggccctggaatggctggtggacgac
gagaaggcccaggacgcgctgttcgccgctggctgggacctgatggtggtcgacgaagcc
caccacctggtatggcacgaagaccaggtcagtccggaatacgcgctggtggaacagctg
gccgaggtgattccgggcgtcctgctgctcaccgccaccccggaacaactgggccaggac
agccactttgcccgtctgcgcctgctcgacccgaaccgtttccacgacctggccgccttc
cgcgccgagagcgagaactatcgcccggtggccgaagccgtgcaggaactgctggataaa
ggacgcctgtcgcccgaagcgcacaagaccatccacaacttcctcggcaacgaaggcgaa
gccctgctcgccgccgtcaacgagggcgacagcgaggccagcgcgcgcctggtgcgcgag
ctgctggaccgccacggcaccggccgtgtgctgttccgcaacacccgcgccgcggtgcaa
ggtttccccgagcgcaagctgcacccctacccgctgccgtgcccggacgaatacctggaa
ctgccgctgggcgagcacgccgagctgtacccggaagtcagcttccaggcccagccggac
gccagcgaagaagagcgctggtggaaattcgacccgcgtgtcgagtggctgatcgaccag
ctgaaaatgctcaagcgcaccaaggtcctggtgatctgcgcccacgcggaaaccgccatg
gacctggaagacgccctgcgcgtgcgttccggcatcccggccacggtgttccacgaaggc
atgaacatcctcgagcgcgaccgcgccgccgcctacttcgccgacgaagagttcggcgcc
caggtactgatctgctcggaaatcggcagtgaaggtcgcaacttccagtttgcccaccac
ctggtgctgttcgatctgccatcgcacccggacctgctggagcagcggatcggccgtctc
gaccggatcggccagaaacacgtgatcgaactgcatgtgccgtacctggaaaccagcccg
caagagcgcctgttccagtggtaccacgaagcgctgaacgccttcctcaatacctgcccg
accggcaacgccctgcagcatcagttcggcccgcgcctgctgccgctgctggaagaagcc
gacgacggcgagtggcaagcgctgatcgacgaggcgcgcaccgagcgcgaacgtcttgag
gctgagctgcacaccggtcgcgaccgtttgctggaactcaactccggcggcgctggcgaa
ggcgacgcgctggtggaagcgatcctcgagcaggacgatcagttcgccctgccgatctac
atggaaaccctgttcgacgccttcggcatcgacagcgaagaccattcggacaacgcgctg
atcctcaagccaagcgaaaaaatgctcgacgccagcttccccctgggcgacgacgaaggc
gttaccatcacctacgaccgcaaccaggcgctgtctcgcgaagacatgcagttcattacc
tgggaacacccgatggtgcaaggcggcatggacctggtgctgtccggctccatgggcaac
accgccgtggcgctgatcaagaacaaggcgctgaaacccggcaccgtgttgctggaactg
ctgtacgtcagtgaagtggtggcaccgcgctcgctgcaactgggccgctacctgccaccg
gccgccctgcgctgcctgctggacgccaacggcaacgacctgtcggcgcgcgtcgccttc
gagaccctcaacgaccagctggaaagcgtgccacgggccagcgccaacaagttcatccag
gcccagcgcgaccagctgacgccgaagatcaacgctggcgaagcgaagattgccccacgt
cacgccgagcgcgtggccgaggcgcaacgtcgcctggccgccgacaccgacgaagaactg
gcgcgcctgaccgcgttgcaggcggtcaacccgaccgtgcgcgacagcgagctggtggcc
ctgcgccaacaacgcgaacaaggcctggccatgcttgagaaagcagcgctgcgcctggaa
gcgatccgggtactggtagcgggctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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