KEGG   Pseudomonas chlororaphis PA23: EY04_28800
Entry
EY04_28800        CDS       T03201                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pch  Pseudomonas chlororaphis PA23
Pathway
pch03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pch00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EY04_28800 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pch03021]
    EY04_28800 (rpoB)
   03400 DNA repair and recombination proteins [BR:pch03400]
    EY04_28800 (rpoB)
Enzymes [BR:pch01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EY04_28800 (rpoB)
Transcription machinery [BR:pch03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EY04_28800 (rpoB)
DNA repair and recombination proteins [BR:pch03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EY04_28800 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AIC22762
Position
complement(6319785..6323858)
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVRGES
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSRFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTDEIVFLSAIEEADHVIAQASATMNDKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVEPGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRKFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgttggagtatgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgctgcgcggtgtaacttacgccgtacctttg
cgggtaaaagttcgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttcccctggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctgctgtactccgcacgtatc
attccttaccgcggttcctggttggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgtgcgttgggctacacc
actgaagaagtgctggacgctttctacaccaccaacgtattccacgtgcgcggcgaaagc
ctgagcctggagttggtgcctcagcgcctgcgtggtgaaattgcggtcctcgatattcag
gatgacaaaggcaaggttattgtcgagcagggtcgtcgtattactgctcgccacatcaac
cagctggaaaaagccgggatcaaagagctggaagtgcctctggactacgtcctgggtcgt
actaccgccaaggtcatcgtgcatccggccaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcgaagatcgccaaggctcaggttgtgcgcatcgaaacg
ctgtacaccaacgatatcgattgcggtccgttcgtttccgacactctaaagatcgactcc
accaccaaccaactggaagcgttggtcgagatctatcgcatgatgcgtcctggcgagcct
ccaaccaaggatgcggccgagaccctgttcaacaacctgttcttcagccctgagcgttat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttccggcgtgttgtgcaaggaagacatcgttgcggttctgaagactctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggcggcggcggtgaaggagttcttcggttccagccagctgtcccggttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgccgtgtctctgcactcggccca
ggcggtctgactcgtgagcgtgcaggcttcgaagttcgtgacgtacacccgactcactat
ggtcgtgtatgcccgatcgagacgccggaaggtccgaacatcggtctgatcaactccctg
gccgcctatgctcgcaccaaccagtacggtttcctcgagagcccgtaccgcgtggtgaaa
gaaggtctggtgaccgacgagatcgtgttcctgtccgccatcgaagaggccgatcacgtg
atcgcccaggcttcggcgaccatgaacgacaaaggtcagctgatcgacgagctggtagcc
gttcgtcacctgaacgaattcactgtcaaggcgccagaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttcggttgcggcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgtaacgttgcccgtgactccggcgtctgc
gtcgtggctcgtcgtggcggtgtgatcgactcggttgatgccagccgtatcgtggttcgt
gttgcagatgacgaagttgagccaggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacttgcatcaaccagcgtccgctggtgagcaagggtgat
cgggttcagcgcagcgacatcatggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggtccaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggatatcccg
aacgtgggtgaggctgcactgaacaagctggacgaagccggtatcgtttatgtcggtgct
gaagttggcgcaggcgacatcctggtcggtaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtacctaccggtaccaagggtactgtcatcgacgtacaggtcttcact
cgtgacggtgtagagcgtgacgctcgtgccctgtcgatcgagaagagccagctcgacgag
atccgcaaggatctgaacgaagagttccgtatcgtcgaaggcgccactttcgagcgtctg
cgttccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggaa
atcaccgacgaagtactcgacggtcttgagcatggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggttgaa
gacatgccgcacgatgccaacggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgcatggtcgaagagcagcgcaaggtcgcggaactgcgtaag
ttcctggacgagatctacaaccagatcggtggtcgtaacgaagatctggatagcttctcc
gatcaggaaatcctggatctggcgaaaaacctacgtggcggcgtgccgatggccactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcggacctgcca
gaaagcggccagatgcaactgaccgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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