KEGG   Phanerochaete carnosa: PHACADRAFT_113708
Entry
PHACADRAFT_113708 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:3.6.4.13]
Organism
pco  Phanerochaete carnosa
Pathway
pco03013  Nucleocytoplasmic transport
pco03015  mRNA surveillance pathway
pco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHACADRAFT_113708
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHACADRAFT_113708
   03015 mRNA surveillance pathway
    PHACADRAFT_113708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pco03019]
    PHACADRAFT_113708
   03041 Spliceosome [BR:pco03041]
    PHACADRAFT_113708
   03009 Ribosome biogenesis [BR:pco03009]
    PHACADRAFT_113708
   03012 Translation factors [BR:pco03012]
    PHACADRAFT_113708
Messenger RNA biogenesis [BR:pco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PHACADRAFT_113708
   mRNA cycle factors
    Stress granule specific factors
     PHACADRAFT_113708
Spliceosome [BR:pco03041]
 Complex C
  Other components
   EJC/TREX
    PHACADRAFT_113708
Ribosome biogenesis [BR:pco03009]
 Eukaryotic type
  90S particles
   Helicases
    PHACADRAFT_113708
Translation factors [BR:pco03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    PHACADRAFT_113708
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 UvrD-helicase TniB
Other DBs
NCBI-GeneID: 18907693
NCBI-ProteinID: XP_007391832
JGI: Phaca1_113708
UniProt: K5WJF5
Position
Unknown
AA seq 396 aa
MSGINAGDEKLIFESSEAVSVVSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPIIQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRAANFTVSSMHGEMVQKE
RDAIMAEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQFYGTQIDEMPVNAAELI
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgtcgggcataaatgctggagacgagaagctcatctttgaatcctccgaggctgtctca
gtagtctcaaccttcgacgaccttggtttgaaggaggatctcctacgaggaatctacgct
tacaattttgaaaagccgtctgccatccaacagcgtgccattctccccatcatccaagga
cgagatgtcattgcacaagcccaatcagggacaggaaagactgcgacgttttccatttcc
atcctccagtcgatcgatgtcactgtgcgggaaacacaagcactggtgctttccccgacc
cgtgagcttgccactcaaatccagtcagtggtcctcgcgctcggcgactacatgaacgtc
cagtgccacgcgtgcattggcggcacctccattggcgaggacatccgcaaactggaatac
ggccagcatgtcgtctctggcacacctggtcgtgtattcgacatgattcgtcgccgaagc
ctccggacacggaacatcaaaatgttggttcttgacgaagccgacgaattgttgaacaag
ggcttcaaggatcaaatttacgatgtttatcgctacctcccccccgcgacccaagtcgtt
ttgctcagcgctacgctcccgtacgatgttctggagatgacgacgaagttcatgaccgac
ccgatccgcatcctcgtcaagcgtgacgagttgacgttggagggcatcaagcagttcttc
gtcgcagtggagaaggaagattggaaattcgacactctgtgcgacttgtacgacacactc
acgatcacccaggcggttattttctgcaacacgaggcgaaaggtggactggctgacggag
aagatgcgcgcggccaattttaccgtctcatcaatgcatggtgagatggtgcagaaggag
cgagacgctatcatggcagagttccgaagtggcacgtcacgcgtgttgattacgactgac
gtctgggcgcgcggtatcgacgtccagcaagtctctttagtcatcaattacgatcttcct
gcaaaccgtgagaactatattcaccgcatcggtcgttcaggacggtttggaaggaagggt
gtggccatcaacttcgtcaccgttgatgacgttcgtatcctccgcgatattgaacaattt
tacggaacccagatagacgaaatgccagtgaatgctgcggaactcatttaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

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