KEGG   Paracoccus contaminans: B0A89_02815
Entry
B0A89_02815       CDS       T04876                                 
Name
(GenBank) ribonuclease E/G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pcon  Paracoccus contaminans
Pathway
pcon03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcon00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B0A89_02815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcon03019]
    B0A89_02815
   03009 Ribosome biogenesis [BR:pcon03009]
    B0A89_02815
Enzymes [BR:pcon01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     B0A89_02815
Messenger RNA biogenesis [BR:pcon03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     B0A89_02815
Ribosome biogenesis [BR:pcon03009]
 Prokaryotic type
  rRNA processing factors
   B0A89_02815
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: ARJ70668
UniProt: A0A1W6D0P5
Position
complement(587134..589980)
AA seq 948 aa
MAKKMLIDATHPEETRVVVADGTRVEDFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFAEIHPDYYQIPAADRRALIEEDRAAAQADEDEEHARERRGSKGRRSRAR
GDERTAERAERAAGGDAVTRSDAIQGMEIADTAEAEDEAAVEAGFAAAPGDEVDPSLAGQ
GGDEAAPERTAEPPADEDAPGEDMQGEDNPADEIESVAEEDVAEEIRPARKPRARRYKIQ
EVIRVRQIMLVQVVKEERGNKGAALTTYLSLPGRYCVLMPNTARGGGISRKITNVADRKK
LKEIAAELEVPQGAGLIIRTAGSQRTRTEIKRDYEYLMRLWDQIRERTFRSIAPAAIYEE
GDLIKRSIRDLYGNDIDEVWVDGERGYRTARDFMAMIMPDQVRAVRHYTDPMPLFARHQV
ESYLAGMFNPTVQLKSGGYIVIGITEALVAIDVNSGRATKEGSIEETAFKTNCEAADEIA
RQLRLRDLAGLIVIDFIDMDERRNNAAVEKRFKDALKNDRARIQVGRISGFGLMEMSRQR
LRPGMLESTTQPCAHCHGTGLIRSDDSMALTILRAIEDEGTRKRSREVLVRAPVAVANFL
MNHKREHLGMIETRYGLSVRLEADPALISPDFTMEKFKTASRSVPEAVSGALSVDASLMA
QIDEAEDTLPVEMAEPEAERPDAAAMRPASEAADDADEGRTRRRRRRRRGGRGDDEGAAE
EAGGSESAEDAAPAEAAAPEGDEAEGGGRSRRRGRSRRRKDRDSGASSEATAPMGAILDE
SRDAAAGVPQDIETGGIPANADGLGAWPEHDALQGDPADAAAMPAADAPADGAFPLATLS
DAQDGAAGSAAAQDQPVHPDDPGRPEEQDGEPALSRNEPAAPVALAHEAAPAVEADPIPD
AAAFPQADDAGDQSPPADIAQPPAGADAPAPRASDPNRPRRRGWWSQG
NT seq 2847 nt   +upstreamnt  +downstreamnt
atggcaaagaaaatgctgatcgacgccacgcatccggaggaaacccgggtcgtcgtggcc
gatggaacgcgggtcgaagactttgacttcgagacggtgaacaagcgccagcttgctggc
aacatctatctggcaaaggtcacgcgggtcgagccttcgctgcaggccgccttcgtggaa
tatggcggcaaccgccacggctttctggccttcgccgagatccaccctgactattaccag
atccccgccgccgaccgccgcgccctgatcgaggaagaccgcgccgccgcccaggcggac
gaggacgaggaacacgcccgcgagcgccgcggcagcaaggggcggcgcagccgcgcccgc
ggcgacgagcggacagccgaaagggccgagcgtgccgcaggcggcgatgcggtcacccgc
agcgatgcgatccagggcatggagatcgccgataccgccgaggccgaggacgaggccgcc
gtcgaagccggctttgccgcggccccgggggatgaggttgatccttcgctcgcagggcag
ggcggggatgaggccgcgcccgagcgcacggccgagccgcccgccgacgaggatgcgccg
ggcgaggacatgcagggcgaggacaatcccgccgacgagatcgaatcggtcgccgaggag
gacgtggccgaggagatccgcccggcccgcaagccgcgtgcccgccgctacaagatccag
gaggtcatcagggtccggcagatcatgctggtccaggtggtcaaggaggaacgcggcaac
aagggcgcggcgctgacgacctatctgtcgctgcccggacgctattgcgtgctgatgccc
aacaccgcccgcggcggcgggatttcccgcaagatcaccaatgtcgccgaccgcaagaag
ctcaaggagatcgcggccgaactcgaggtgccgcagggcgccgggctgatcatccgcacc
gccggcagccagcgcacccggaccgagatcaagcgcgactatgaatatctgatgcggctg
tgggaccagatccgcgaacgcaccttccgctcgatcgcgccggcggcgatctatgaggaa
ggcgatctcatcaagcgctcgatccgcgatctttacggcaacgacatcgacgaagtgtgg
gtcgatggcgagcgcggctatcgcaccgccagggacttcatggcgatgatcatgcccgac
caggtccgggcggtcaggcattacaccgatccgatgcccctgttcgcgcgccatcaggtg
gaaagctatctggccgggatgttcaacccgaccgtccagctgaaatcgggcggctatatc
gttatcggcatcaccgaggcgctggtggccatcgacgtgaactcgggccgggcgaccaag
gaaggctcgatcgaggaaaccgccttcaagaccaactgcgaggccgccgacgagatcgcg
cgccagttgcggctgcgcgacctggcggggctgatcgtcatcgacttcatcgacatggac
gagcggcgcaacaatgcggcggtcgaaaagcggttcaaggacgcgctgaagaacgaccgg
gcgcggatccaggtcggccgcatttccggctttggcctgatggagatgagccgccagcgg
ctgcggccgggcatgctggaatcgaccacccagccctgcgcccattgccacggcaccggc
ctgatccggtcggacgattcgatggcgctgaccattctgcgggcgatcgaggacgagggc
acgcgcaagcgatcgcgcgaggttctggtcagggcgccggttgcggttgctaatttcctg
atgaaccacaagcgagagcatctcggcatgatcgagacgcgctatggactgtcggtgcgg
ctcgaagcggacccggcgctgatttcgcccgatttcaccatggagaagttcaagaccgcc
tcgcggtcggtgcccgaggcggtgtcgggcgcgctttcggtggatgccagcctgatggcg
cagatcgacgaggccgaggataccctgccggtcgagatggccgagccggaggccgaaagg
ccggatgcggctgcgatgcggccggccagcgaggccgcggatgacgcggatgagggccgg
acgcgccgtcgccggcgccgccgccgcggtggacgcggggatgacgagggcgcggcagag
gaagccggtggcagcgagagcgccgaggatgctgcccctgcagaggctgccgcccccgag
ggtgacgaggccgagggcggcggccgttcgcgccggcgcggccgctcacggcggcgcaag
gaccgcgattcgggcgcctcatccgaggcgaccgcccccatgggcgccatcctggacgaa
agccgcgatgccgcggcgggcgttccccaggacattgagaccggcggcatcccggcaaat
gccgatgggctgggcgcctggccggagcatgacgccctgcagggtgatcctgcagatgcc
gcagccatgcccgccgccgatgcgcccgccgatggagcctttcccctggcaactctgagc
gacgcgcaggatggcgccgcgggcagcgccgctgcccaggaccagccggttcatccggac
gatccgggccgcccggaggagcaggatggcgagccggccctcagccgcaacgagcctgcg
gcgccggtcgcccttgcgcatgaagctgccccggctgtcgaggctgacccgatccccgat
gcggccgcattcccgcaagccgatgacgcaggggaccagtccccgccggcggatatcgcc
cagcccccggccggggccgatgccccggcgccccgggcgtccgacccgaaccgcccgcgc
cggcgcggctggtggtcccagggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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