KEGG   Pseudomonas chlororaphis subsp. aurantiaca: JM49_27550
Entry
JM49_27550        CDS       T03338                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pcp  Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02024  Quorum sensing
pcp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JM49_27550
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JM49_27550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcp03019]
    JM49_27550
   03036 Chromosome and associated proteins [BR:pcp03036]
    JM49_27550
Messenger RNA biogenesis [BR:pcp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     JM49_27550
Chromosome and associated proteins [BR:pcp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    JM49_27550
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AIS15294
UniProt: A0A1E1FPX8
Position
complement(6026602..6026862)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSASESEQGDAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatactttacgtaaagagaaagtt
ggggtttccatctatctggtcaacgggatcaagctgcaaggtacgatcgagtctttcgac
cagttcgtcatcctgctgaagaacaccgtcagccaaatggtttacaagcacgctatctcg
acagtggtaccggttcgtccaattcgcctgcctagcgcatccgaatccgaacagggtgac
gctgagccaggtaacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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