KEGG   Phascolarctos cinereus (koala): 110196277
Entry
110196277         CDS       T05867                                 
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K13126  polyadenylate-binding protein
Organism
pcw  Phascolarctos cinereus (koala)
Pathway
pcw03015  mRNA surveillance pathway
pcw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcw00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110196277 (PABPC1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110196277 (PABPC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcw03019]
    110196277 (PABPC1)
   03041 Spliceosome [BR:pcw03041]
    110196277 (PABPC1)
Messenger RNA biogenesis [BR:pcw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110196277 (PABPC1)
   mRNA cycle factors
    Stress granule specific factors
     110196277 (PABPC1)
Spliceosome [BR:pcw03041]
 Complex C
  Other components
   Complex C specific factors
    110196277 (PABPC1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_5 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 110196277
NCBI-ProteinID: XP_020825106
UniProt: A0A6P5J1N8
Position
Unknown
AA seq 633 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAY
YPASQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRV
ANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ
EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKAVSATGVPTV
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgaatcccagtgcccccagctaccctatggcctcgctctacgtgggggatctgcacccc
gatgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggctacgcctatgtcaacttccag
cagccggcggacgctgaacgggcattagatacaatgaattttgatgtcattaagggcaag
ccagtgcgtatcatgtggtctcaacgtgatccatcgctacgtaaaagtggtgtgggcaat
atattcatcaaaaatttggataaatccattgataataaagcattgtatgacacattttct
gcttttggaaacatcctttcatgtaaggtggtatgtgatgaaaatgggtcaaagggctat
ggatttgtacactttgagacacaagaagctgctgaaagagctattgaaaaaatgaatgga
atgcttcttaatgatcgaaaagtctttgttggtcgatttaaatcccgtaaagaaagagaa
gcagaacttggagctagagcaaaagagttcaccaatgtttacatcaaaaattttggtgaa
gacatggatgatgaaagacttaaggagctctttggcaagtttggacctgctttaagtgta
aaagtaatgactgatgaaagtggaaaatccaaaggttttggctttgtgagctttgaaaga
catgaagatgcacaaaaagctgtagatgagatgaatggaaaagaactgaatggaaaacaa
atttatgttggccgagctcagaaaaaagtggaacgacagacggaactcaagcgcaaattt
gagcaaatgaagcaggataggatcaccagataccagggtgttaacctgtatgttaagaat
ctggatgatggtattgatgatgagcgtctgcgaaaagagttctcaccatttggtacgatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaagggtttgggtttgtatgtttc
tcttcgccagaggaagccaccaaagcagtcacagaaatgaatggcaggattgttgccact
aagccattgtatgtagctttagctcagcgtaaagaggaacggcaggctcacctcacaaac
cagtatatgcagagaatggcgagtgtcagagctgtgcccaaccctgtaatcaacccctat
cagcctccttcaggttacttcatggcagctattcctcagactcagaaccgtgctgcatac
tatcctgctagccaaattgctcaactcagaccaagtcctcgctggactgctcagggtgcc
agacctcatccattccagaacatgcccggtgctatccgcccagcagctcctaggccacca
tttagtacaatgagaccagcttcttcacaggttccacgagtcatgtcaacacagcgtgtt
gcaaacacatcaactcagacaatgggtccacgtcctgcagcagctgctgctgcagctact
cctgctgtccgcacagttccacagtataagtatgctgcaggtgttcgcaatccacaacag
catcttaatgcacaaccacaggttaccatgcagcagcctgctgttcatgtgcaaggtcag
gaacctttaactgcttccatgttggcatccgctcctcctcaagagcaaaagcagatgttg
ggtgaacggctgtttccactcattcaggccatgcaccctaccctggctggtaaaatcact
ggcatgttgctagaaattgacaactctgagcttcttcacatgcttgagtctcccgagtct
cttcgctctaaggttgatgaagccgtagccgtactgcaagctcaccaagctaaagaagct
gcccagaaagcagttagtgccactggtgttccaactgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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