KEGG   Phascolarctos cinereus (koala): 110206315
Entry
110206315         CDS       T05867                                 
Symbol
PABPC4
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4
  KO
K13126  polyadenylate-binding protein
Organism
pcw  Phascolarctos cinereus (koala)
Pathway
pcw03015  mRNA surveillance pathway
pcw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcw00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110206315 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110206315 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcw03019]
    110206315 (PABPC4)
   03041 Spliceosome [BR:pcw03041]
    110206315 (PABPC4)
Messenger RNA biogenesis [BR:pcw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110206315 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     110206315 (PABPC4)
Spliceosome [BR:pcw03041]
 Complex C
  Other components
   Complex C specific factors
    110206315 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 RRM_3
Other DBs
NCBI-GeneID: 110206315
NCBI-ProteinID: XP_020839249
UniProt: A0A6P5K2C9
Position
Unknown
AA seq 630 aa
MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEK
HXDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRP
PYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNAIRQSGPRPTLRHLTPASNTQASRGLPTT
PQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAASVRSPHPAIQPLQTPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHHAKKEAAQKVAVVAATS
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgaacactgctgccagcagttaccccatggcctccctgtacgtgggtgacctgcactcg
gatgtcaccgaagccatgctgtatgagaagttcagccctgccggacccgtgctctccatc
cgggtctgcagggacatgattaccaggcgctccctgggctatgcctatgtcaacttccag
cagccggcggatgctgaacgtgccctggataccatgaactttgatgtaattaaaggcaaa
ccgatccgcatcatgtggtctcagcgggatccttcattgaggaaatcaggagttgggaat
gttttcattaaaaacctggataaatccatagacaacaaggcactttatgacaccttttcg
gcatttggaaacatcttgtcctgcaaagtggtgtgtgatgagaatggttctaaaggctac
gcatttgtgcactttgagacccaggatgctgcagatagggccatcgagaagatgaacggc
atgcttctcaacgaccgcaaagtgtttgttggtagattcaagtcaaggaaagaacgggaa
gcagaactgggtgccaaagctaaggaatttactaatgtttatatcaaaaactttggagat
gacatggatgatgaaagattgaaggaacttttcagcaaatatggtaaaactctgagtgta
aaagtgatgactgactctagtggaaaatccaaaggctttggttttgtgagttttgagaaa
catngggatgccaataaggcagttgaagaaatgaatggaaaagacatcaatgggaaaatg
gtatttgtaggccgggcacagaagaaagttgaacgccaggctgaattaaaacggaaattt
gagcagctaaaacaggagagaattagccgctaccagggggtaaatctctatattaagaac
ctggatgacactattgacgatgaaaaattaaggaaggaattttctccttttggatctatt
accagtgccaaggtgatgctcgaggatgggcgaagtaaagggtttggctttgtctgcttc
tcctctcctgatgaggctaccaaagcagtaacagaaatgaatgggcgcatcgtgggctcc
aagcccttgtatgtcgcacttgcgcaaagaaaagaagagagaaaagcccacctgaccaat
cagtatatgcagcgtattgcaggaatgagagcccttcctgccaacaccatcattaaccag
tttcagcctactcctggggggtacttcatgccagcagtgccacaggctcagaatagacct
ccttattatgctcccaatcaaatagcccagatgagacctaatcctcggtggcagcaaggt
ggaagacctcaaggctttcaaggagtgccaaatgccattcgccagtcggggccacgtcca
actcttcgccacctgactccagccagtaatacccaggcttctcgaggtctccctactaca
cctcagcgagtgggggtgcccactgctgtgcaaaatttatctcctagaccttctgtagct
acccctgcaccgagagctgttcctccttacaaatatgctgcaagtgtccgaagcccccat
ccagctatccagcctttgcagacacctcagccagcagtccatgtgcaaggccaggagccc
ctgacagcttccatgctggctgctgctcctccgcaggaacagaagcagatgctgggagag
cgtttgttcccattgattcaaaccatgcacaataacttagcggggaagattacaggtatg
ctgctagagattgataattcagagctgctgcacatgctggagtctccagagtccctccgg
tcaaaggtggaggaagccgttgcagtattacaagctcatcatgccaagaaggaagctgct
cagaaggtggccgtggttgctgctacctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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