KEGG   Phoenix dactylifera (date palm): 103709767
Entry
103709767         CDS       T03274                                 
Name
(RefSeq) polyadenylate-binding protein 3
  KO
K13126  polyadenylate-binding protein
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03015  mRNA surveillance pathway
pda03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103709767
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103709767
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103709767
   03041 Spliceosome [BR:pda03041]
    103709767
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103709767
   mRNA cycle factors
    Stress granule specific factors
     103709767
Spliceosome [BR:pda03041]
 Complex C
  Other components
   Complex C specific factors
    103709767
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 RRM_3
Other DBs
NCBI-GeneID: 103709767
NCBI-ProteinID: XP_008793488
UniProt: A0A8B7C7N7
Position
8:21228560..21240322
AA seq 650 aa
MANMAPAPLAGPVQPSPPQMSPTPVPSEAYINASLYVGDLDLSITEGQLFDLFSQVGPVA
SVRVCRDQIRRVSLGYAYVNFHTAQDANHALEVLNFTPINGKPIRIMFSHRDPSIRKSGY
ANVFIKNLDHSIDNKALHDIFVSFGTVLSCKVAIDFNGQSKGYGFVQFERDDAAQKAINQ
LNGMLINGKQVYVGFFIRRQERESANGTPKFFNVYVKNLPEKFTDDDLKNEFGAFGEITS
AAVMKDENGISRGFGFVNFKDSSAAASAVEKYNGKALHDKVLYVGKAQKKSEREAELKAK
YEQERSGRMEKLQGCNLYLKNLDDNVNDDRLKELFRPFGTIISCKVMVDSQGQSKGSGFV
QFFSPDEANSAINEMNGKMIGTKPLYVAVAQRKEERRARLQAHFAQLSAQGTMTPAMPSM
PSYHPGPPRLAPQQLYFGQGAPGLIPPQPAGYGFQQQLIPGIRPGVAPNFMMPYNLQRQG
QPGQRVGARRGVSQQMQQQQLIQRNANQGFRYMQSARNGVDPTMIPQGLMGPMMPLPLDA
SGMHVAPMDAVRSSPIPITALASALASAAPERQRLMLGEQLYPLVERVERDQAGKVTGML
LEMDQTEVLHLIESPDALQKKVAEALEVLRLAQSPGSDAADQLGSLSLND
NT seq 1953 nt   +upstreamnt  +downstreamnt
atggcgaacatggctcccgctcccctggccggccccgtccagccttccccgccgcagatg
tcgccgacgccggtgccgagcgaggcgtacatcaacgcctcgctttacgtcggcgatctc
gatctgtccattacggaggggcagcttttcgatctttttagccaggtcgggcccgtcgcc
tccgttagggtttgcagggaccaaatccgcagggtttccctcggttatgcttacgtcaat
ttccataccgcccaagacgctaatcatgccctagaggttttgaattttacgccaataaat
gggaaacctatcaggattatgttttcgcaccgagatcctagtattcgaaagagtggttat
gctaatgtatttatcaagaatcttgaccactcgatcgataacaaggcattgcatgatata
tttgtctcctttggtactgtcctttcctgtaaggtggccattgattttaatggtcagtcg
aaaggatatggctttgtgcagtttgaacgtgatgatgcagctcagaaggctattaatcaa
cttaatgggatgttgatcaatggaaaacaagtttatgttggtttctttatccgtcgtcaa
gaaagagaatctgcaaatggaactccaaagttctttaatgtatatgtaaagaatttgcct
gaaaagtttactgatgatgatttgaaaaatgaatttggagcattcggtgagatcactagt
gcagcagttatgaaagatgaaaatggaatttctaggggatttggctttgtaaattttaaa
gactcaagtgctgctgcttctgcagttgagaaatataatggaaaggctttacatgataaa
gttttgtatgttggaaaagcacagaaaaaatctgaaagagaggctgagttgaaggccaaa
tatgaacaggagagaagtggaagaatggaaaaacttcaagggtgtaacttgtatttaaag
aatcttgatgataatgttaatgatgatcgtcttaaagagctgttccgtccatttggcact
ataatttcgtgcaaggtcatggtggattcacaaggccagagcaaaggttctggttttgtg
caatttttttctccagacgaagctaacagtgctataaatgaaatgaatggcaagatgata
ggaacgaagcctttatatgttgctgtggctcaacgtaaagaggagagaagagcaaggttg
caggctcattttgcacagcttagtgctcaggggactatgacacctgcaatgccctctatg
cccagctaccaccctggtccacctaggcttgccccacagcaactttactttggtcagggt
gctcctggtctcattccgccccaacctgcgggctatggtttccaacagcagcttattcca
ggaatccggcctggtgttgcccctaacttcatgatgccttataaccttcagaggcaagga
caacctggacaaagggtaggtgctaggcgaggagtgtcccagcaaatgcagcagcagcag
ttgattcagcgtaatgctaatcagggctttagatatatgcaaagtgctcgtaatggggtt
gatccaacaatgatacctcagggtctgatgggtccaatgatgcctttgccacttgatgca
agtggtatgcatgtcgctccgatggatgcagtccgatcttcaccaattccaatcacagct
cttgcctctgctctagcttctgcagctcctgagcgtcaacgactgatgctgggtgagcag
ttatacccacttgttgaacgtgttgaacgggatcaggctggcaaagtgactggaatgctc
ctagagatggatcaaactgaggtcctccaccttatagaatctccagatgcactccagaag
aaagttgcagaagctttggaagtcctacggttagcacaatctccaggttcagatgctgca
gatcagcttggctcattgtccctgaatgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (57)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (72)   

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