HEADER RNA BINDING PROTEIN 16-MAY-05 1X5T
TITLE SOLUTION STRUCTURE OF THE SECOND RRM DOMAIN IN SPLICING
TITLE 2 FACTOR = 3B
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SPLICING FACTOR 3B SUBUNIT 4;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RRM DOMAIN;
COMPND 5 SYNONYM: SPLICEOSOME ASSOCIATED PROTEIN 49, SAP 49, SF3B50,
COMPND 6 PRE-MRNA SPLICING FACTOR SF3B 49 KDA SUBUNIT;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SF3B4, SAP49;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040517-06;
SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS NMR, STRUCTURE GENOMICS, RRM DOMAIN, STRUCTURAL GENOMICS,
KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND
KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS
KEYWDS 4 INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.SATO,K.KUWASAKO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,
AUTHOR 2 T.TERADA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS
AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 1X5T 1 VERSN
REVDAT 1 16-NOV-05 1X5T 0
JRNL AUTH A.SATO,K.KUWASAKO,Y.MUTO,M.INOUE,T.KIGAWA,
JRNL AUTH 2 M.SHIROUZU,T.TERADA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE SECOND RRM DOMAIN IN
JRNL TITL 2 SPLICING FACTOR = 3B
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 1
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CYANA 2.0.17
REMARK 3 AUTHORS : GUNTERT,P.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1X5T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05.
REMARK 100 THE RCSB ID CODE IS RCSB024415.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM
REMARK 210 PHOSPHATE BUFFER NA; 100MM
REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3;
REMARK 210 90% H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_
REMARK 210 13C-SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE
REMARK 210 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.925, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 2 137.82 -172.80
REMARK 500 1 THR A 25 -36.81 -39.97
REMARK 500 1 THR A 35 132.34 -38.39
REMARK 500 1 ASP A 43 -71.99 -96.78
REMARK 500 1 SER A 47 121.14 -174.82
REMARK 500 1 ASN A 69 84.04 -64.04
REMARK 500 1 GLN A 71 119.77 -35.46
REMARK 500 1 CYS A 74 91.09 -32.19
REMARK 500 1 ASN A 75 47.57 39.39
REMARK 500 1 ARG A 76 109.83 -170.43
REMARK 500 1 TYR A 82 122.98 -38.16
REMARK 500 2 ASN A 12 49.69 74.10
REMARK 500 2 THR A 25 -38.48 -37.54
REMARK 500 2 PHE A 29 -70.60 -57.51
REMARK 500 2 THR A 35 138.97 -35.42
REMARK 500 2 PRO A 42 1.67 -69.76
REMARK 500 2 ASN A 46 104.26 -43.30
REMARK 500 2 SER A 47 122.87 -35.64
REMARK 500 2 ALA A 67 -60.12 -93.10
REMARK 500 2 ASN A 69 86.93 -69.18
REMARK 500 2 CYS A 74 90.90 -33.69
REMARK 500 2 ARG A 76 106.03 -170.32
REMARK 500 2 TYR A 82 108.14 -45.71
REMARK 500 2 LYS A 85 123.21 -171.68
REMARK 500 2 SER A 94 49.54 34.45
REMARK 500 3 PRO A 15 0.50 -69.75
REMARK 500 3 LEU A 21 -70.17 -48.28
REMARK 500 3 THR A 35 133.41 -37.05
REMARK 500 3 SER A 47 105.48 -48.03
REMARK 500 3 ASN A 69 81.47 -65.99
REMARK 500 3 CYS A 74 90.87 -33.17
REMARK 500 3 ARG A 76 105.58 -170.42
REMARK 500 3 ASP A 87 134.29 -172.41
REMARK 500 4 THR A 35 135.19 -39.72
REMARK 500 4 ASP A 43 -64.36 -100.37
REMARK 500 4 ASN A 69 73.91 -63.98
REMARK 500 4 GLN A 71 127.90 -34.06
REMARK 500 4 CYS A 74 90.96 -32.16
REMARK 500 4 ASN A 75 47.15 39.35
REMARK 500 4 ARG A 76 112.81 -170.60
REMARK 500 4 TYR A 82 127.42 -35.79
REMARK 500 4 LYS A 86 56.34 -112.82
REMARK 500 5 THR A 35 136.67 -36.52
REMARK 500 5 THR A 44 -74.49 -77.08
REMARK 500 5 SER A 47 107.32 -47.60
REMARK 500 5 ALA A 67 -60.66 -96.59
REMARK 500 5 ASN A 69 96.54 -56.69
REMARK 500 5 CYS A 74 90.39 -31.71
REMARK 500 5 ASN A 75 48.08 39.81
REMARK 500 5 ARG A 76 106.66 -170.93
REMARK 500 5 PRO A 77 99.56 -69.79
REMARK 500 5 TYR A 82 100.70 -51.27
REMARK 500 5 ALA A 83 131.62 -38.15
REMARK 500 6 THR A 35 132.56 -39.95
REMARK 500 6 ASN A 69 83.37 -60.48
REMARK 500 6 GLN A 71 122.03 -39.33
REMARK 500 6 CYS A 74 91.34 -32.65
REMARK 500 6 ARG A 76 109.33 -170.11
REMARK 500 6 LYS A 85 119.20 -39.27
REMARK 500 6 SER A 88 -56.20 -126.70
REMARK 500 7 SER A 2 -178.01 -55.74
REMARK 500 7 SER A 5 57.40 -108.02
REMARK 500 7 ASN A 12 54.97 74.12
REMARK 500 7 THR A 25 -36.55 -37.94
REMARK 500 7 THR A 35 131.26 -36.48
REMARK 500 7 MET A 39 96.46 -67.54
REMARK 500 7 ARG A 40 -75.69 -67.95
REMARK 500 7 ASP A 43 -75.28 -127.29
REMARK 500 7 ASN A 46 -72.15 -97.96
REMARK 500 7 SER A 47 121.47 -173.97
REMARK 500 7 ILE A 65 -19.73 -49.06
REMARK 500 7 ALA A 67 -61.05 -103.19
REMARK 500 7 ASN A 69 87.18 -59.79
REMARK 500 7 GLN A 71 122.07 -38.97
REMARK 500 7 CYS A 74 91.08 -30.28
REMARK 500 7 ASN A 75 49.30 37.94
REMARK 500 7 ARG A 76 110.65 -170.64
REMARK 500 8 SER A 2 -73.57 -51.86
REMARK 500 8 THR A 35 133.27 -34.26
REMARK 500 8 PRO A 42 2.72 -69.76
REMARK 500 8 ASN A 69 79.69 -57.65
REMARK 500 8 CYS A 74 90.57 -30.94
REMARK 500 8 ASN A 75 49.34 39.07
REMARK 500 8 ARG A 76 106.78 -171.26
REMARK 500 8 ALA A 83 96.24 -36.45
REMARK 500 9 SER A 3 128.13 -39.07
REMARK 500 9 SER A 6 99.97 -48.19
REMARK 500 9 ASN A 12 49.24 72.04
REMARK 500 9 THR A 35 136.34 -35.39
REMARK 500 9 PRO A 42 3.36 -69.77
REMARK 500 9 ASP A 43 -73.36 -115.63
REMARK 500 9 SER A 47 147.97 -173.34
REMARK 500 9 ASN A 69 78.57 -58.41
REMARK 500 9 GLN A 71 134.99 -35.46
REMARK 500 9 CYS A 74 91.23 -28.21
REMARK 500 9 ASN A 75 50.05 35.18
REMARK 500 9 ARG A 76 112.19 -171.08
REMARK 500 10 ASN A 12 47.09 71.25
REMARK 500 10 PRO A 15 1.93 -69.80
REMARK 500 10 THR A 25 -35.57 -36.99
REMARK 500 10 THR A 35 131.90 -36.01
REMARK 500 10 ASP A 43 -63.19 -90.84
REMARK 500 10 SER A 47 103.67 -58.99
REMARK 500 10 ALA A 64 -72.19 -58.64
REMARK 500 10 ILE A 65 -26.50 -39.84
REMARK 500 10 ASN A 69 88.13 -58.27
REMARK 500 10 GLN A 71 121.50 -34.19
REMARK 500 10 CYS A 74 90.74 -33.09
REMARK 500 10 ARG A 76 111.07 -169.79
REMARK 500 11 ASN A 12 50.67 71.38
REMARK 500 11 THR A 25 -32.41 -39.61
REMARK 500 11 SER A 27 -29.91 -39.71
REMARK 500 11 THR A 35 137.66 -39.44
REMARK 500 11 ASP A 41 109.07 -50.31
REMARK 500 11 ASP A 43 -70.93 -95.94
REMARK 500 11 SER A 47 106.62 -38.62
REMARK 500 11 ILE A 65 -19.28 -48.00
REMARK 500 11 ASN A 69 96.98 -51.50
REMARK 500 11 GLN A 71 140.68 -34.96
REMARK 500 11 CYS A 74 91.76 -29.52
REMARK 500 11 ASN A 75 48.19 35.92
REMARK 500 11 ARG A 76 105.88 -171.79
REMARK 500 11 LYS A 85 -32.47 -36.36
REMARK 500 11 SER A 91 -34.74 -131.44
REMARK 500 12 ASN A 12 47.59 73.91
REMARK 500 12 THR A 25 -36.74 -39.19
REMARK 500 12 THR A 35 137.76 -35.08
REMARK 500 12 ILE A 65 -19.52 -49.11
REMARK 500 12 ALA A 67 -61.00 -105.15
REMARK 500 12 ASN A 69 75.28 -61.63
REMARK 500 12 GLN A 71 130.42 -38.21
REMARK 500 12 CYS A 74 91.24 -29.87
REMARK 500 12 ASN A 75 49.16 36.93
REMARK 500 12 ARG A 76 109.94 -170.94
REMARK 500 12 SER A 91 135.21 -171.72
REMARK 500 13 SER A 5 44.56 -104.20
REMARK 500 13 SER A 6 43.06 -91.91
REMARK 500 13 ASN A 12 54.05 74.46
REMARK 500 13 THR A 25 -38.80 -38.51
REMARK 500 13 THR A 35 133.11 -36.78
REMARK 500 13 ASP A 41 109.42 -47.11
REMARK 500 13 ALA A 67 -60.81 -96.58
REMARK 500 13 ASN A 69 82.03 -56.88
REMARK 500 13 CYS A 74 90.28 -30.61
REMARK 500 13 ASN A 75 49.35 38.87
REMARK 500 13 ARG A 76 107.29 -171.14
REMARK 500 13 PRO A 77 99.21 -69.80
REMARK 500 13 PHE A 84 114.98 -39.68
REMARK 500 14 SER A 2 89.98 -60.51
REMARK 500 14 THR A 35 133.32 -36.04
REMARK 500 14 SER A 47 106.32 -44.57
REMARK 500 14 ALA A 67 -60.37 -101.95
REMARK 500 14 ASN A 69 74.06 -63.82
REMARK 500 14 CYS A 74 91.41 -28.67
REMARK 500 14 ASN A 75 49.70 35.58
REMARK 500 14 ARG A 76 112.75 -171.40
REMARK 500 15 ASN A 12 35.03 72.55
REMARK 500 15 THR A 35 135.48 -38.06
REMARK 500 15 ASP A 41 100.71 -35.29
REMARK 500 15 ILE A 65 -19.80 -47.60
REMARK 500 15 ALA A 67 -60.34 -101.88
REMARK 500 15 ASN A 69 102.70 -59.13
REMARK 500 15 CYS A 74 91.85 -31.36
REMARK 500 15 ASN A 75 46.51 38.29
REMARK 500 15 ARG A 76 109.68 -171.35
REMARK 500 15 ALA A 83 89.35 -51.40
REMARK 500 15 LYS A 85 -74.27 -128.29
REMARK 500 15 SER A 94 99.07 -48.94
REMARK 500 16 SER A 3 -62.95 -128.10
REMARK 500 16 ASN A 12 54.52 74.96
REMARK 500 16 SER A 27 -39.61 -34.35
REMARK 500 16 THR A 35 137.17 -33.52
REMARK 500 16 PRO A 42 0.96 -69.76
REMARK 500 16 ASN A 46 -63.02 -134.80
REMARK 500 16 SER A 47 105.43 -172.61
REMARK 500 16 ILE A 65 -19.98 -49.10
REMARK 500 16 ALA A 67 -61.15 -98.96
REMARK 500 16 ASN A 69 91.39 -55.12
REMARK 500 16 GLN A 71 132.30 -33.59
REMARK 500 16 CYS A 74 92.07 -27.65
REMARK 500 16 ASN A 75 50.55 35.83
REMARK 500 16 ARG A 76 112.10 -172.46
REMARK 500 16 SER A 88 93.86 -61.88
REMARK 500 17 SER A 2 40.90 -88.98
REMARK 500 17 SER A 5 48.68 -85.56
REMARK 500 17 ASN A 12 45.44 72.63
REMARK 500 17 THR A 35 134.61 -39.64
REMARK 500 17 ALA A 67 -61.20 -98.57
REMARK 500 17 ASN A 69 86.37 -63.80
REMARK 500 17 CYS A 74 89.94 -26.52
REMARK 500 17 ASN A 75 52.21 35.52
REMARK 500 17 ARG A 76 109.46 -171.09
REMARK 500 17 PRO A 77 95.63 -69.77
REMARK 500 17 TYR A 82 107.93 -58.66
REMARK 500 17 LYS A 86 84.15 -62.17
REMARK 500 17 ASP A 87 42.15 -106.86
REMARK 500 17 SER A 91 -56.07 -129.97
REMARK 500 17 PRO A 93 95.06 -69.75
REMARK 500 17 SER A 94 109.52 -38.55
REMARK 500 17 SER A 95 165.64 -42.64
REMARK 500 18 ASN A 12 45.27 71.40
REMARK 500 18 LEU A 21 -70.31 -51.08
REMARK 500 18 THR A 35 138.30 -37.29
REMARK 500 18 ASN A 69 84.82 -61.08
REMARK 500 18 GLN A 71 125.86 -38.17
REMARK 500 18 CYS A 74 90.61 -26.00
REMARK 500 18 ASN A 75 52.83 39.24
REMARK 500 18 ARG A 76 109.88 -175.02
REMARK 500 19 SER A 2 -70.74 -44.63
REMARK 500 19 ASN A 12 54.98 73.66
REMARK 500 19 THR A 35 131.80 -37.71
REMARK 500 19 ASP A 41 117.12 -38.17
REMARK 500 19 ALA A 67 -60.76 -104.83
REMARK 500 19 ASN A 69 76.47 -66.65
REMARK 500 19 CYS A 74 90.69 -27.00
REMARK 500 19 ASN A 75 50.59 34.63
REMARK 500 19 ARG A 76 109.54 -172.46
REMARK 500 19 TYR A 82 108.44 -50.01
REMARK 500 19 LYS A 86 94.55 -63.40
REMARK 500 19 LYS A 89 99.51 -66.10
REMARK 500 19 SER A 94 35.97 39.75
REMARK 500 20 SER A 3 40.01 37.39
REMARK 500 20 ASN A 12 53.37 71.62
REMARK 500 20 PRO A 15 0.64 -69.73
REMARK 500 20 THR A 35 136.06 -39.31
REMARK 500 20 ALA A 67 -60.12 -99.66
REMARK 500 20 ASN A 69 77.32 -66.40
REMARK 500 20 CYS A 74 90.83 -31.00
REMARK 500 20 ASN A 75 48.98 38.98
REMARK 500 20 ARG A 76 108.62 -170.38
REMARK 500 20 PRO A 77 97.89 -69.71
REMARK 500 20 ASP A 87 161.06 -44.23
REMARK 500 20 PRO A 93 -179.72 -69.78
REMARK 500 20 SER A 95 42.23 38.49
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSS001003928.2 RELATED DB: TARGETDB
DBREF 1X5T A 8 90 UNP Q15427 SF3B4_HUMAN 102 184
SEQADV 1X5T GLY A 1 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 2 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 3 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T GLY A 4 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 5 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 6 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T GLY A 7 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 91 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T GLY A 92 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T PRO A 93 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 94 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T SER A 95 UNP Q15427 CLONING ARTIFACT
SEQADV 1X5T GLY A 96 UNP Q15427 CLONING ARTIFACT
SEQRES 1 A 96 GLY SER SER GLY SER SER GLY ILE PHE ILE GLY ASN LEU
SEQRES 2 A 96 ASP PRO GLU ILE ASP GLU LYS LEU LEU TYR ASP THR PHE
SEQRES 3 A 96 SER ALA PHE GLY VAL ILE LEU GLN THR PRO LYS ILE MET
SEQRES 4 A 96 ARG ASP PRO ASP THR GLY ASN SER LYS GLY TYR ALA PHE
SEQRES 5 A 96 ILE ASN PHE ALA SER PHE ASP ALA SER ASP ALA ALA ILE
SEQRES 6 A 96 GLU ALA MET ASN GLY GLN TYR LEU CYS ASN ARG PRO ILE
SEQRES 7 A 96 THR VAL SER TYR ALA PHE LYS LYS ASP SER LYS GLY SER
SEQRES 8 A 96 GLY PRO SER SER GLY
HELIX 1 1 GLU A 19 SER A 27 1 9
HELIX 2 2 SER A 57 ALA A 67 1 11
SHEET 1 A 4 LYS A 37 ILE A 38 0
SHEET 2 A 4 TYR A 50 ASN A 54 -1 O PHE A 52 N LYS A 37
SHEET 3 A 4 GLY A 7 GLY A 11 -1 N ILE A 8 O ILE A 53
SHEET 4 A 4 THR A 79 TYR A 82 -1 O SER A 81 N PHE A 9
SHEET 1 B 2 TYR A 72 LEU A 73 0
SHEET 2 B 2 ARG A 76 PRO A 77 -1 O ARG A 76 N LEU A 73
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
(ATOM LINES ARE NOT SHOWN.)
END
