GenomeNet

Database: PDB
Entry: 1ZV5
LinkDB: 1ZV5
Original site: 1ZV5 
HEADER    HYDROLASE/IMMUNE SYSTEM                 01-JUN-05   1ZV5              
TITLE     CRYSTAL STRUCTURE OF THE VARIABLE DOMAIN OF THE CAMELID HEAVY-CHAIN   
TITLE    2 ANTIBODY D2-L29 IN COMPLEX WITH HEN EGG WHITE LYSOZYME               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: LYSOZYME C;                                                
COMPND   3 CHAIN: L;                                                            
COMPND   4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D 4, GAL D IV;  
COMPND   5 EC: 3.2.1.17;                                                        
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN ANTIBODY VARIABLE DOMAIN;       
COMPND   8 CHAIN: A;                                                            
COMPND   9 FRAGMENT: VHH D2-L29;                                                
COMPND  10 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: GALLUS GALLUS;                                  
SOURCE   3 ORGANISM_COMMON: CHICKEN;                                            
SOURCE   4 ORGANISM_TAXID: 9031;                                                
SOURCE   5 MOL_ID: 2;                                                           
SOURCE   6 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS;                            
SOURCE   7 ORGANISM_COMMON: ARABIAN CAMEL;                                      
SOURCE   8 ORGANISM_TAXID: 9838;                                                
SOURCE   9 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  10 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE  11 EXPRESSION_SYSTEM_STRAIN: WK6SU-;                                    
SOURCE  12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  13 EXPRESSION_SYSTEM_PLASMID: PHEN06                                    
KEYWDS    BETA-SANDWICH, IMMUNOGLOBULIN FOLD, PROTEIN-PROTEIN HETEROCOMPLEX,    
KEYWDS   2 ALPHA-BETA ORTHOGONAL BUNDLE, HYDROLASE-IMMUNE SYSTEM COMPLEX        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    E.DE GENST,K.SILENCE,K.DECANNIERE,K.CONRATH,R.LORIS,J.KINNE,          
AUTHOR   2 S.MUYLDERMANS,L.WYNS                                                 
REVDAT   4   23-AUG-23 1ZV5    1       REMARK                                   
REVDAT   3   11-OCT-17 1ZV5    1       REMARK                                   
REVDAT   2   24-FEB-09 1ZV5    1       VERSN                                    
REVDAT   1   04-APR-06 1ZV5    0                                                
JRNL        AUTH   E.DE GENST,K.SILENCE,K.DECANNIERE,K.CONRATH,R.LORIS,J.KINNE, 
JRNL        AUTH 2 S.MUYLDERMANS,L.WYNS                                         
JRNL        TITL   MOLECULAR BASIS FOR THE PREFERENTIAL CLEFT RECOGNITION BY    
JRNL        TITL 2 DROMEDARY HEAVY-CHAIN ANTIBODIES.                            
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 103  4586 2006              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   16537393                                                     
JRNL        DOI    10.1073/PNAS.0505379103                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 23.67                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 2209106.750                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 99.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 16470                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.217                           
REMARK   3   FREE R VALUE                     : 0.239                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 830                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.008                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.00                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.13                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 100.0                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2540                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2330                       
REMARK   3   BIN FREE R VALUE                    : 0.2500                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.20                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 140                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.021                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1824                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 10                                      
REMARK   3   SOLVENT ATOMS            : 46                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 35.80                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -3.09000                                             
REMARK   3    B22 (A**2) : -3.09000                                             
REMARK   3    B33 (A**2) : 6.18000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.24                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.15                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.28                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.17                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.400                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 25.30                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.110                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.370 ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.090 ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.030 ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 2.920 ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.41                                                 
REMARK   3   BSOL        : 65.62                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : RESTRAINTS                                              
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN.TOP                                    
REMARK   3  PARAMETER FILE  2  : WATER.TOP                                      
REMARK   3  PARAMETER FILE  3  : PO4_XPLOR_TOP.TXT                              
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN_REP.PARAM                              
REMARK   3  TOPOLOGY FILE  2   : WATER_REP.PARAM                                
REMARK   3  TOPOLOGY FILE  3   : PO4_XPLOR_PAR.TXT                              
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED                   
REMARK   4                                                                      
REMARK   4 1ZV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000033156.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-OCT-03                          
REMARK 200  TEMPERATURE           (KELVIN) : 298                                
REMARK 200  PH                             : 7.4                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : EMBL/DESY, HAMBURG                 
REMARK 200  BEAMLINE                       : X11                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.8123                             
REMARK 200  MONOCHROMATOR                  : SAGITALLY FOCUSED SI(111)          
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 4                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 16498                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : 0.05600                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.07                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.42500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: ENTITY 1: CHAIN L OF 1JTT, ENTITY 2: 1YCV            
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 35.90                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PEG 400, PH 7.4,      
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+3/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+1/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+3/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+1/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       17.83650            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       57.03650            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       57.03650            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       26.75475            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       57.03650            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       57.03650            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000        8.91825            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       57.03650            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       57.03650            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       26.75475            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       57.03650            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       57.03650            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000        8.91825            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       17.83650            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, A                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASP A     1                                                      
REMARK 465     SER A   121                                                      
REMARK 465     ARG A   122                                                      
REMARK 465     GLY A   123                                                      
REMARK 465     ARG A   124                                                      
REMARK 465     HIS A   125                                                      
REMARK 465     HIS A   126                                                      
REMARK 465     HIS A   127                                                      
REMARK 465     HIS A   128                                                      
REMARK 465     HIS A   129                                                      
REMARK 465     HIS A   130                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS L   1    CE   NZ                                             
REMARK 470     ARG L  21    CD   NE   CZ   NH1  NH2                             
REMARK 470     GLN L  41    CD   OE1  NE2                                       
REMARK 470     ARG L  61    CB   CG   CD   NE   CZ   NH1  NH2                   
REMARK 470     ARG L  68    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG L  73    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ASN L  77    OD1  ND2                                            
REMARK 470     LYS L  97    CG   CD   CE   NZ                                   
REMARK 470     ASN L 103    CG   OD1  ND2                                       
REMARK 470     LYS L 116    CD   CE   NZ                                        
REMARK 470     ASP L 119    CB   CG   OD1  OD2                                  
REMARK 470     GLN L 121    CG   CD   OE1  NE2                                  
REMARK 470     ARG L 125    CB   CG   CD   NE   CZ   NH1  NH2                   
REMARK 470     ARG L 128    CB   CG   CD   NE   CZ   NH1  NH2                   
REMARK 470     GLN A  13    CG   CD   OE1  NE2                                  
REMARK 470     LYS A  30    CG   CD   CE   NZ                                   
REMARK 470     GLU A  46    CG   CD   OE1  OE2                                  
REMARK 470     LYS A  65    CG   CD   CE   NZ                                   
REMARK 470     LYS A  76    CD   CE   NZ                                        
REMARK 470     LYS A  87    CD   CE   NZ                                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  14      151.12    -48.41                                   
REMARK 500    VAL A  48      -67.46   -109.33                                   
REMARK 500    ASN A  77       50.66     36.80                                   
REMARK 500    ALA A  92      172.19    174.84                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 131                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 132                 
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 THE SEQUENCE OF A CAMELID HEAVY-CHAIN ANTIBODY                       
REMARK 999 HAS NOT BEEN DEPOSITED INTO ANY SEQUENCE DATABASE.                   
DBREF  1ZV5 L    1   129  UNP    P00698   LYSC_CHICK      19    147             
DBREF  1ZV5 A    1   130  PDB    1ZV5     1ZV5             1    130             
SEQRES   1 L  129  LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS          
SEQRES   2 L  129  ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY          
SEQRES   3 L  129  ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN          
SEQRES   4 L  129  THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP          
SEQRES   5 L  129  TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN          
SEQRES   6 L  129  ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE          
SEQRES   7 L  129  PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER          
SEQRES   8 L  129  VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY          
SEQRES   9 L  129  MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY          
SEQRES  10 L  129  THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU              
SEQRES   1 A  130  ASP VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN          
SEQRES   2 A  130  ALA GLY GLU SER LEU ARG LEU SER CYS ALA ALA SER GLY          
SEQRES   3 A  130  VAL THR TYR LYS ASN TYR CYS ILE GLY TRP PHE ARG GLN          
SEQRES   4 A  130  ALA PRO GLY LYS ASP ARG GLU GLY VAL VAL PHE ILE ASN          
SEQRES   5 A  130  SER ASP GLY GLY ILE THR TYR TYR ALA ASP SER VAL LYS          
SEQRES   6 A  130  GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR          
SEQRES   7 A  130  VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR          
SEQRES   8 A  130  ALA SER TYR TYR CYS ALA ALA GLY TYR ARG ASN TYR GLY          
SEQRES   9 A  130  GLN CYS ALA THR ARG TYR TRP GLY GLN GLY THR GLN VAL          
SEQRES  10 A  130  THR VAL SER SER ARG GLY ARG HIS HIS HIS HIS HIS HIS          
HET    PO4  A 131       5                                                       
HET    PO4  A 132       5                                                       
HETNAM     PO4 PHOSPHATE ION                                                    
FORMUL   3  PO4    2(O4 P 3-)                                                   
FORMUL   5  HOH   *46(H2 O)                                                     
HELIX    1   1 GLY L    4  ARG L   14  1                                  11    
HELIX    2   2 ASN L   19  TYR L   23  5                                   5    
HELIX    3   3 SER L   24  ASN L   37  1                                  14    
HELIX    4   4 PRO L   79  SER L   85  5                                   7    
HELIX    5   5 ILE L   88  VAL L   99  1                                  12    
HELIX    6   6 ASN L  103  ALA L  107  5                                   5    
HELIX    7   7 TRP L  108  CYS L  115  1                                   8    
HELIX    8   8 ASP L  119  ARG L  125  5                                   7    
HELIX    9   9 ALA A   61  LYS A   65  5                                   5    
HELIX   10  10 ASN A   74  LYS A   76  5                                   3    
HELIX   11  11 LYS A   87  THR A   91  5                                   5    
SHEET    1   A 3 THR L  43  ARG L  45  0                                        
SHEET    2   A 3 THR L  51  TYR L  53 -1  O  ASP L  52   N  ASN L  44           
SHEET    3   A 3 ILE L  58  ASN L  59 -1  O  ILE L  58   N  TYR L  53           
SHEET    1   B 4 GLN A   3  SER A   7  0                                        
SHEET    2   B 4 LEU A  18  SER A  25 -1  O  ALA A  23   N  VAL A   5           
SHEET    3   B 4 THR A  78  MET A  83 -1  O  MET A  83   N  LEU A  18           
SHEET    4   B 4 PHE A  68  ASP A  73 -1  N  SER A  71   O  TYR A  80           
SHEET    1   C 6 GLY A  10  GLN A  13  0                                        
SHEET    2   C 6 THR A 115  SER A 120  1  O  THR A 118   N  GLY A  10           
SHEET    3   C 6 ALA A  92  ASN A 102 -1  N  TYR A  94   O  THR A 115           
SHEET    4   C 6 TYR A  32  GLN A  39 -1  N  GLY A  35   O  ALA A  97           
SHEET    5   C 6 GLU A  46  ASN A  52 -1  O  GLU A  46   N  ARG A  38           
SHEET    6   C 6 ILE A  57  TYR A  59 -1  O  THR A  58   N  PHE A  50           
SHEET    1   D 4 GLY A  10  GLN A  13  0                                        
SHEET    2   D 4 THR A 115  SER A 120  1  O  THR A 118   N  GLY A  10           
SHEET    3   D 4 ALA A  92  ASN A 102 -1  N  TYR A  94   O  THR A 115           
SHEET    4   D 4 GLN A 105  TRP A 111 -1  O  GLN A 105   N  ASN A 102           
SSBOND   1 CYS L    6    CYS L  127                          1555   1555  2.03  
SSBOND   2 CYS L   30    CYS L  115                          1555   1555  2.03  
SSBOND   3 CYS L   64    CYS L   80                          1555   1555  2.03  
SSBOND   4 CYS L   76    CYS L   94                          1555   1555  2.03  
SSBOND   5 CYS A   22    CYS A   96                          1555   1555  2.02  
SSBOND   6 CYS A   33    CYS A  106                          1555   1555  2.03  
SITE     1 AC1  9 ASN A  52  ARG A 101  TYR A 103  GLY A 104                    
SITE     2 AC1  9 HOH A 155  HOH A 164  HIS L  15  ASN L  93                    
SITE     3 AC1  9 LYS L  96                                                     
SITE     1 AC2  4 GLN A  39  ASP A  44  ARG A  45  ARG L  45                    
CRYST1  114.073  114.073   35.673  90.00  90.00  90.00 P 43 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008770  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.008770  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.028030        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
DBGET integrated database retrieval system