HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-MAY-05 2CQX
TITLE SOLUTION STRUCTURE OF RSGI RUH-034, A HOMEODOMAIN FROM MOUSE CDNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LAG1 LONGEVITY ASSURANCE HOMOLOG 5;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 8-66;
COMPND 5 SYNONYM: TRANSLOCATING CHAIN-ASSOCIATING MEMBRANE PROTEIN HOMOLOG 4,
COMPND 6 TRAM HOMOLOG 4, HOMEODOMAIN;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P040727-13;
SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS (E. COLI)
KEYWDS HOMEODOMAIN, DNA BINDING DOMAIN, TRANSCRIPTION, STRUCTURAL GENOMICS,
KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL
KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,
KEYWDS 4 UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.Z.M.RUHUL MOMEN,H.ONUKI,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA,
AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 09-MAR-22 2CQX 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2CQX 1 VERSN
REVDAT 1 20-NOV-05 2CQX 0
JRNL AUTH A.Z.M.RUHUL MOMEN,H.ONUKI,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,
JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-034, A HOMEODOMAIN FROM MOUSE
JRNL TITL 2 CDNA
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.6, CYANA 2.017
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2CQX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024524.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.30MM DOMAIN U 15N, 13C; 20MM D
REMARK 210 -TRIS-HCL (PH 7.0); 100MM NACL;
REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04,
REMARK 210 KUJIRA 0.9295, CYANA 2.017
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY,STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PRO A 19 3.24 -69.82
REMARK 500 1 THR A 22 -26.95 -38.14
REMARK 500 1 GLU A 24 -34.30 -36.53
REMARK 500 1 THR A 31 143.07 -175.21
REMARK 500 1 LYS A 65 158.92 -47.57
REMARK 500 1 SER A 70 106.34 -46.25
REMARK 500 2 SER A 5 -56.29 -129.70
REMARK 500 2 LYS A 16 142.20 -37.98
REMARK 500 2 PRO A 19 3.73 -69.85
REMARK 500 2 THR A 31 143.74 -175.13
REMARK 500 3 LYS A 10 -53.79 -122.46
REMARK 500 3 LYS A 16 71.29 -108.46
REMARK 500 3 PRO A 19 3.18 -69.77
REMARK 500 3 THR A 22 -32.50 -35.33
REMARK 500 3 GLU A 24 -31.91 -38.06
REMARK 500 3 THR A 31 143.65 -172.38
REMARK 500 3 ASP A 64 -32.33 -38.35
REMARK 500 3 PRO A 69 0.15 -69.73
REMARK 500 3 SER A 71 151.97 -35.03
REMARK 500 4 ASP A 11 90.04 -59.53
REMARK 500 4 PRO A 19 3.06 -69.74
REMARK 500 4 THR A 22 -32.38 -37.26
REMARK 500 4 THR A 31 146.60 -175.27
REMARK 500 4 ASP A 47 41.59 36.54
REMARK 500 4 VAL A 50 -34.99 -39.47
REMARK 500 4 ARG A 61 -39.78 -36.39
REMARK 500 5 PRO A 19 3.16 -69.70
REMARK 500 5 THR A 22 -35.48 -39.70
REMARK 500 5 THR A 31 145.61 -174.04
REMARK 500 5 GLU A 36 -35.36 -39.86
REMARK 500 5 ASP A 47 44.83 37.66
REMARK 500 5 SER A 67 44.46 35.19
REMARK 500 5 PRO A 69 94.41 -69.81
REMARK 500 6 SER A 5 42.61 -84.24
REMARK 500 6 ASP A 11 44.75 -100.78
REMARK 500 6 PRO A 13 84.16 -69.82
REMARK 500 6 LYS A 16 79.44 -103.07
REMARK 500 6 PRO A 19 3.21 -69.77
REMARK 500 6 THR A 22 -34.60 -34.01
REMARK 500 6 ASP A 47 40.92 37.32
REMARK 500 6 SER A 67 122.95 -35.54
REMARK 500 7 ASP A 11 -61.99 -109.94
REMARK 500 7 PRO A 19 3.41 -69.79
REMARK 500 7 THR A 22 -32.95 -34.36
REMARK 500 7 GLU A 24 -35.15 -34.77
REMARK 500 7 THR A 31 142.62 -175.07
REMARK 500 7 ASP A 47 47.55 35.03
REMARK 500 7 VAL A 50 -34.64 -36.60
REMARK 500 7 SER A 71 42.01 -102.73
REMARK 500 8 VAL A 14 111.24 -33.94
REMARK 500
REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT008000075.1 RELATED DB: TARGETDB
DBREF 2CQX A 8 66 UNP Q9D6K9 LASS5_MOUSE 77 135
SEQADV 2CQX GLY A 1 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 2 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 3 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX GLY A 4 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 5 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 6 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX GLY A 7 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 67 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX GLY A 68 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX PRO A 69 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 70 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX SER A 71 UNP Q9D6K9 CLONING ARTIFACT
SEQADV 2CQX GLY A 72 UNP Q9D6K9 CLONING ARTIFACT
SEQRES 1 A 72 GLY SER SER GLY SER SER GLY GLY ILE LYS ASP SER PRO
SEQRES 2 A 72 VAL ASN LYS VAL GLU PRO ASN ASP THR LEU GLU LYS VAL
SEQRES 3 A 72 PHE VAL SER VAL THR LYS TYR PRO ASP GLU LYS ARG LEU
SEQRES 4 A 72 LYS GLY LEU SER LYS GLN LEU ASP TRP SER VAL ARG LYS
SEQRES 5 A 72 ILE GLN CYS TRP PHE ARG HIS ARG ARG ASN GLN ASP LYS
SEQRES 6 A 72 PRO SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 21 VAL A 30 1 10
HELIX 2 2 GLU A 36 LEU A 46 1 11
HELIX 3 3 VAL A 50 ASP A 64 1 15
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
(ATOM LINES ARE NOT SHOWN.)
END
