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Database: PDB
Entry: 2DQK
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Original site: 2DQK 
HEADER    HYDROLASE                               29-MAY-06   2DQK              
TITLE     CRYSTAL STRUCTURE OF THE COMPLEX OF PROTEINASE K WITH A SPECIFIC      
TITLE    2 LACTOFERRIN PEPTIDE VAL-LEU-LEU-HIS AT 1.93 A RESOLUTION             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEINASE K;                                              
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: TRITIRACHIUM ALKALINE PROTEINASE, ENDOPEPTIDASE K;          
COMPND   5 EC: 3.4.21.64;                                                       
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: VLLH;                                                      
COMPND   8 CHAIN: P;                                                            
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ENGYODONTIUM ALBUM;                             
SOURCE   3 ORGANISM_TAXID: 37998;                                               
SOURCE   4 STRAIN: LIMBER;                                                      
SOURCE   5 MOL_ID: 2;                                                           
SOURCE   6 SYNTHETIC: YES;                                                      
SOURCE   7 OTHER_DETAILS: LACTOFERRIN PEPTIDE, CHEMICALLY SYNTHESIZED           
KEYWDS    PROTEINSASE K, SYNTHETIC PEPTIDE, HYDROLASE                           
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.K.SINGH,N.SINGH,S.SHARMA,S.DEY,A.BHUSHAN,T.P.SINGH                  
REVDAT   4   25-OCT-23 2DQK    1       REMARK SEQADV LINK                       
REVDAT   3   11-OCT-17 2DQK    1       REMARK                                   
REVDAT   2   24-FEB-09 2DQK    1       VERSN                                    
REVDAT   1   20-JUN-06 2DQK    0                                                
JRNL        AUTH   A.K.SINGH,N.SINGH,R.K.SOMVANSHI,M.SINHA,S.SHARMA,A.BHUSHAN,  
JRNL        AUTH 2 S.DEY,T.P.SINGH                                              
JRNL        TITL   CRYSTAL STRUCTURE OF THE COMPLEX OF PROTEINASE K WITH A      
JRNL        TITL 2 SPECIFIC LACTOFERRIN PEPTIDE VAL-LEU-LEU-HIS AT 1.93         
JRNL        TITL 3 RESOLUTION                                                   
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.93 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.0                                           
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 57.74                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.2                           
REMARK   3   NUMBER OF REFLECTIONS             : 18805                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.154                           
REMARK   3   R VALUE            (WORKING SET) : 0.152                           
REMARK   3   FREE R VALUE                     : 0.187                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1012                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.93                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.98                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1334                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1830                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 86                           
REMARK   3   BIN FREE R VALUE                    : 0.2240                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2064                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 5                                       
REMARK   3   SOLVENT ATOMS            : 291                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 13.26                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.16000                                             
REMARK   3    B22 (A**2) : -0.16000                                             
REMARK   3    B33 (A**2) : 0.32000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.150         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.131         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.082         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.770         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.957                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.936                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2108 ; 0.008 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  2864 ; 1.318 ; 1.936       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   281 ; 3.848 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   324 ;15.529 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   319 ; 0.085 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1624 ; 0.004 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   985 ; 0.213 ; 0.300       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   268 ; 0.140 ; 0.500       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):     3 ; 0.029 ; 0.500       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    23 ; 0.232 ; 0.300       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    20 ; 0.161 ; 0.500       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1392 ; 0.496 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2206 ; 0.996 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   716 ; 1.931 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   658 ; 3.315 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000025725.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 14-MAY-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 291                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU RU300                       
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : GRAPHITE                           
REMARK 200  OPTICS                         : MIRROR                             
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MAR SCANNER 345 MM PLATE           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MAR                                
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 19884                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.930                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 57.740                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.6                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.96                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: 3PRK                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 42.72                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, CACL2, PH 7.5, VAPOR     
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 298K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+3/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+1/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+3/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+1/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       54.20350            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       34.15650            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       34.15650            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       81.30525            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       34.15650            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       34.15650            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       27.10175            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       34.15650            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       34.15650            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       81.30525            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       34.15650            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       34.15650            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       27.10175            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       54.20350            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2                           
REMARK 350 SURFACE AREA OF THE COMPLEX: 10490 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A2014  LIES ON A SPECIAL POSITION.                          
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A  39     -142.12   -164.89                                   
REMARK 500    SER A 216     -166.29   -114.39                                   
REMARK 500    ASN A 270       78.78   -107.60                                   
REMARK 500    LEU P   2     -121.16   -110.77                                   
REMARK 500    LEU P   3       69.22     92.71                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A1001  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 PRO A 175   O                                                      
REMARK 620 2 VAL A 177   O    86.0                                              
REMARK 620 3 ASP A 200   OD2 156.8  79.2                                        
REMARK 620 4 ASP A 200   OD1 152.9 113.5  50.2                                  
REMARK 620 5 HOH A2003   O    83.5  73.3  75.1 119.1                            
REMARK 620 6 HOH A2013   O    97.9 145.2  84.6  76.9  72.9                      
REMARK 620 7 HOH A2016   O    78.8 141.3 123.6  74.2 138.5  72.8                
REMARK 620 8 HOH A2023   O    87.8  73.2 104.8  80.8 145.8 141.2  70.8          
REMARK 620 N                    1     2     3     4     5     6     7           
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 2001                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1BJR   RELATED DB: PDB                                   
REMARK 900 COMPLEX FORMED BETWEEN PROTEOLYTICALLY GENERATED LACTOFERRIN         
REMARK 900 FRAGMENT AND PROTEINASE K                                            
DBREF  2DQK A    1   279  UNP    P06873   PRTK_TRIAL     106    384             
DBREF  2DQK P    1     4  PDB    2DQK     2DQK             1      4             
SEQADV 2DQK ASP A  207  UNP  P06873    SER   312 CONFLICT                       
SEQRES   1 A  279  ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE          
SEQRES   2 A  279  SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP          
SEQRES   3 A  279  GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP          
SEQRES   4 A  279  THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG          
SEQRES   5 A  279  ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP          
SEQRES   6 A  279  GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY          
SEQRES   7 A  279  SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE          
SEQRES   8 A  279  GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR          
SEQRES   9 A  279  SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP          
SEQRES  10 A  279  LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER          
SEQRES  11 A  279  LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER          
SEQRES  12 A  279  ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA          
SEQRES  13 A  279  VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR          
SEQRES  14 A  279  SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA          
SEQRES  15 A  279  SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR          
SEQRES  16 A  279  GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE          
SEQRES  17 A  279  LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER          
SEQRES  18 A  279  GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA          
SEQRES  19 A  279  ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER          
SEQRES  20 A  279  ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP          
SEQRES  21 A  279  LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA          
SEQRES  22 A  279  TYR ASN ASN TYR GLN ALA                                      
SEQRES   1 P    4  VAL LEU LEU HIS                                              
HET     CA  A1001       1                                                       
HET    NO3  A2001       4                                                       
HETNAM      CA CALCIUM ION                                                      
HETNAM     NO3 NITRATE ION                                                      
FORMUL   3   CA    CA 2+                                                        
FORMUL   4  NO3    N O3 1-                                                      
FORMUL   5  HOH   *291(H2 O)                                                    
HELIX    1   1 PRO A    7  ILE A   13  1                                   7    
HELIX    2   2 HIS A   46  GLU A   50  5                                   5    
HELIX    3   3 GLY A   68  SER A   79  1                                  12    
HELIX    4   4 GLN A  103  LYS A  118  1                                  16    
HELIX    5   5 ASN A  119  ARG A  121  5                                   3    
HELIX    6   6 SER A  138  SER A  151  1                                  14    
HELIX    7   7 ASP A  165  ARG A  167  5                                   3    
HELIX    8   8 GLY A  222  LEU A  240  1                                  19    
HELIX    9   9 SER A  247  THR A  255  1                                   9    
SHEET    1   A 2 ALA A   2  GLN A   3  0                                        
SHEET    2   A 2 TYR A  23  TYR A  24 -1  O  TYR A  23   N  GLN A   3           
SHEET    1   B 7 ALA A  53  THR A  58  0                                        
SHEET    2   B 7 GLN A  89  LYS A  94  1  O  LYS A  94   N  LYS A  57           
SHEET    3   B 7 SER A  33  ASP A  39  1  N  VAL A  35   O  GLN A  89           
SHEET    4   B 7 GLY A 126  LEU A 131  1  O  SER A 130   N  TYR A  36           
SHEET    5   B 7 MET A 154  ALA A 158  1  O  MET A 154   N  ALA A 129           
SHEET    6   B 7 CYS A 178  SER A 183  1  O  VAL A 180   N  VAL A 157           
SHEET    7   B 7 ILE A 201  PRO A 204  1  O  ILE A 201   N  GLY A 181           
SHEET    1   C 2 GLY A 135  GLY A 136  0                                        
SHEET    2   C 2 TYR A 169  SER A 170 -1  O  SER A 170   N  GLY A 135           
SHEET    1   D 2 ILE A 208  TRP A 212  0                                        
SHEET    2   D 2 SER A 216  ILE A 220 -1  O  ILE A 220   N  ILE A 208           
SHEET    1   E 2 ASN A 257  LYS A 258  0                                        
SHEET    2   E 2 LEU A 271  LEU A 272 -1  O  LEU A 272   N  ASN A 257           
SSBOND   1 CYS A   34    CYS A  123                          1555   1555  2.02  
SSBOND   2 CYS A  178    CYS A  249                          1555   1555  2.02  
LINK         O   PRO A 175                CA    CA A1001     1555   1555  2.38  
LINK         O   VAL A 177                CA    CA A1001     1555   1555  2.40  
LINK         OD2 ASP A 200                CA    CA A1001     1555   1555  2.45  
LINK         OD1 ASP A 200                CA    CA A1001     1555   1555  2.62  
LINK        CA    CA A1001                 O   HOH A2003     1555   1555  2.39  
LINK        CA    CA A1001                 O   HOH A2013     1555   1555  2.46  
LINK        CA    CA A1001                 O   HOH A2016     1555   1555  2.53  
LINK        CA    CA A1001                 O   HOH A2023     1555   1555  2.44  
CISPEP   1 SER A  170    PRO A  171          0         1.32                     
SITE     1 AC1  7 PRO A 175  VAL A 177  ASP A 200  HOH A2003                    
SITE     2 AC1  7 HOH A2013  HOH A2016  HOH A2023                               
SITE     1 AC2  8 TYR A  60  TYR A  61  ARG A  80  LYS A  94                    
SITE     2 AC2  8 ASP A  97  ASP A  98  HOH A2133  HOH A2252                    
CRYST1   68.313   68.313  108.407  90.00  90.00  90.00 P 43 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014639  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.014639  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009224        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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