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Database: PDB
Entry: 2DZY
LinkDB: 2DZY
Original site: 2DZY 
HEADER    HYDROLASE                               30-SEP-06   2DZY              
TITLE     CRYSTAL STRUCTURE OF N392A MUTANT OF YEAST BLEOMYCIN HYDROLASE        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CYSTEINE PROTEINASE 1;                                     
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: Y3, BLEOMYCIN HYDROLASE, BLM HYDROLASE;                     
COMPND   5 EC: 3.4.22.40;                                                       
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    BLEOMYCIN HYDROLASE, THIOL PROTEASE, C1 PROTEASE, BURIED WATER,       
KEYWDS   2 HYDROLASE                                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    P.A.O'FARRELL,L.JOSHUA-TOR                                            
REVDAT   5   25-OCT-23 2DZY    1       REMARK                                   
REVDAT   4   10-NOV-21 2DZY    1       SEQADV                                   
REVDAT   3   13-JUL-11 2DZY    1       VERSN                                    
REVDAT   2   24-FEB-09 2DZY    1       VERSN                                    
REVDAT   1   14-AUG-07 2DZY    0                                                
JRNL        AUTH   P.A.O'FARRELL,L.JOSHUA-TOR                                   
JRNL        TITL   MUTAGENESIS AND CRYSTALLOGRAPHIC STUDIES OF THE CATALYTIC    
JRNL        TITL 2 RESIDUES OF THE PAPAIN FAMILY PROTEASE BLEOMYCIN HYDROLASE:  
JRNL        TITL 3 NEW INSIGHTS INTO ACTIVE-SITE STRUCTURE                      
JRNL        REF    BIOCHEM.J.                    V. 401   421 2007              
JRNL        REFN                   ISSN 0264-6021                               
JRNL        PMID   17007609                                                     
JRNL        DOI    10.1042/BJ20060641                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.57 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 43.29                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 242380.290                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 97.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 19270                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.198                           
REMARK   3   FREE R VALUE                     : 0.253                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 940                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.008                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.57                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.73                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 95.50                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2885                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2060                       
REMARK   3   BIN FREE R VALUE                    : 0.2940                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.80                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 178                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.022                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3686                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 187                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 23.40                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 25.30                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.78000                                              
REMARK   3    B22 (A**2) : 0.78000                                              
REMARK   3    B33 (A**2) : -1.56000                                             
REMARK   3    B12 (A**2) : 4.75000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.26                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.14                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.35                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.23                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.008                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.400                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 22.30                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.920                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.760 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.740 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 3.090 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 4.070 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.32                                                 
REMARK   3   BSOL        : 16.21                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  3   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000026052.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 95                                 
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X26C                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.1                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 4                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 19700                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.570                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : NULL                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT      
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: 1GCB                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 56.33                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 14-20% PEG 4K,100MM TRIS-HCL, PH 8.5,    
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+1/2                                            
REMARK 290       6555   X-Y,X,Z+1/2                                             
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   X-Y,-Y,-Z                                               
REMARK 290       9555   -X,-X+Y,-Z                                              
REMARK 290      10555   -Y,-X,-Z+1/2                                            
REMARK 290      11555   -X+Y,Y,-Z+1/2                                           
REMARK 290      12555   X,X-Y,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       44.83450            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       44.83450            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       44.83450            
REMARK 290   SMTRY1   7 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   9 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   9  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1  10  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  10 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000       44.83450            
REMARK 290   SMTRY1  11 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  11  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000       44.83450            
REMARK 290   SMTRY1  12  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  12  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000       44.83450            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC                  
REMARK 350 SOFTWARE USED: PISA,PQS                                              
REMARK 350 TOTAL BURIED SURFACE AREA: 33750 ANGSTROM**2                         
REMARK 350 SURFACE AREA OF THE COMPLEX: 102770 ANGSTROM**2                      
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -0.500000 -0.866025  0.000000      151.02700            
REMARK 350   BIOMT2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   3 -0.500000  0.866025  0.000000       75.51350            
REMARK 350   BIOMT2   3 -0.866025 -0.500000  0.000000      130.79322            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   4  0.500000 -0.866025  0.000000       75.51350            
REMARK 350   BIOMT2   4 -0.866025 -0.500000  0.000000      130.79322            
REMARK 350   BIOMT3   4  0.000000  0.000000 -1.000000       44.83450            
REMARK 350   BIOMT1   5 -1.000000  0.000000  0.000000      151.02700            
REMARK 350   BIOMT2   5  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   5  0.000000  0.000000 -1.000000       44.83450            
REMARK 350   BIOMT1   6  0.500000  0.866025  0.000000        0.00000            
REMARK 350   BIOMT2   6  0.866025 -0.500000  0.000000        0.00000            
REMARK 350   BIOMT3   6  0.000000  0.000000 -1.000000       44.83450            
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     SER A   2    OG                                                  
REMARK 470     PHE A  17    CE2                                                 
REMARK 480                                                                      
REMARK 480 ZERO OCCUPANCY ATOM                                                  
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO                  
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS                
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;              
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 480   M RES C SSEQI ATOMS                                                
REMARK 480     LYS A   93   CE   NZ                                             
REMARK 480     LYS A  309   CE   NZ                                             
REMARK 480     SER A  382   CB   OG                                             
REMARK 480     LYS A  383   CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A  68     -136.40     66.60                                   
REMARK 500    LEU A  87      -71.64    -44.14                                   
REMARK 500    ASN A  91       79.78     55.95                                   
REMARK 500    ALA A 137       67.59   -152.60                                   
REMARK 500    TYR A 163       91.07   -173.45                                   
REMARK 500    ALA A 172       76.88   -163.93                                   
REMARK 500    SER A 258      -60.02    -96.83                                   
REMARK 500    PRO A 265       -7.42    -58.32                                   
REMARK 500    PRO A 275        2.72    -59.77                                   
REMARK 500    ARG A 287      -20.46     59.13                                   
REMARK 500    ASN A 290      -49.88   -143.20                                   
REMARK 500    ASN A 318       41.29     71.73                                   
REMARK 500    PRO A 328       41.74   -104.12                                   
REMARK 500    THR A 381       75.54    -52.42                                   
REMARK 500    SER A 382       43.08     35.31                                   
REMARK 500    LEU A 384     -169.22   -103.36                                   
REMARK 500    SER A 393       55.65   -119.73                                   
REMARK 500    PHE A 416      -48.76   -131.95                                   
REMARK 500    SER A 435     -170.68    -65.32                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    TYR A  33         0.07    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2DZZ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2E00   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2E01   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2E02   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2E03   RELATED DB: PDB                                   
DBREF  2DZY A    1   453  UNP    Q01532   BLH1_YEAST       1    454             
SEQADV 2DZY PHE A   -3  UNP  Q01532              EXPRESSION TAG                 
SEQADV 2DZY GLN A   -2  UNP  Q01532              EXPRESSION TAG                 
SEQADV 2DZY GLY A   -1  UNP  Q01532              EXPRESSION TAG                 
SEQADV 2DZY ALA A    0  UNP  Q01532              EXPRESSION TAG                 
SEQADV 2DZY ALA A  392  UNP  Q01532    ASN   392 ENGINEERED MUTATION            
SEQADV 2DZY     A       UNP  Q01532    LYS   454 DELETION                       
SEQRES   1 A  457  PHE GLN GLY ALA MET SER SER SER ILE ASP ILE SER LYS          
SEQRES   2 A  457  ILE ASN SER TRP ASN LYS GLU PHE GLN SER ASP LEU THR          
SEQRES   3 A  457  HIS GLN LEU ALA THR THR VAL LEU LYS ASN TYR ASN ALA          
SEQRES   4 A  457  ASP ASP ALA LEU LEU ASN LYS THR ARG LEU GLN LYS GLN          
SEQRES   5 A  457  ASP ASN ARG VAL PHE ASN THR VAL VAL SER THR ASP SER          
SEQRES   6 A  457  THR PRO VAL THR ASN GLN LYS SER SER GLY ARG CYS TRP          
SEQRES   7 A  457  LEU PHE ALA ALA THR ASN GLN LEU ARG LEU ASN VAL LEU          
SEQRES   8 A  457  SER GLU LEU ASN LEU LYS GLU PHE GLU LEU SER GLN ALA          
SEQRES   9 A  457  TYR LEU PHE PHE TYR ASP LYS LEU GLU LYS ALA ASN TYR          
SEQRES  10 A  457  PHE LEU ASP GLN ILE VAL SER SER ALA ASP GLN ASP ILE          
SEQRES  11 A  457  ASP SER ARG LEU VAL GLN TYR LEU LEU ALA ALA PRO THR          
SEQRES  12 A  457  GLU ASP GLY GLY GLN TYR SER MET PHE LEU ASN LEU VAL          
SEQRES  13 A  457  LYS LYS TYR GLY LEU ILE PRO LYS ASP LEU TYR GLY ASP          
SEQRES  14 A  457  LEU PRO TYR SER THR THR ALA SER ARG LYS TRP ASN SER          
SEQRES  15 A  457  LEU LEU THR THR LYS LEU ARG GLU PHE ALA GLU THR LEU          
SEQRES  16 A  457  ARG THR ALA LEU LYS GLU ARG SER ALA ASP ASP SER ILE          
SEQRES  17 A  457  ILE VAL THR LEU ARG GLU GLN MET GLN ARG GLU ILE PHE          
SEQRES  18 A  457  ARG LEU MET SER LEU PHE MET ASP ILE PRO PRO VAL GLN          
SEQRES  19 A  457  PRO ASN GLU GLN PHE THR TRP GLU TYR VAL ASP LYS ASP          
SEQRES  20 A  457  LYS LYS ILE HIS THR ILE LYS SER THR PRO LEU GLU PHE          
SEQRES  21 A  457  ALA SER LYS TYR ALA LYS LEU ASP PRO SER THR PRO VAL          
SEQRES  22 A  457  SER LEU ILE ASN ASP PRO ARG HIS PRO TYR GLY LYS LEU          
SEQRES  23 A  457  ILE LYS ILE ASP ARG LEU GLY ASN VAL LEU GLY GLY ASP          
SEQRES  24 A  457  ALA VAL ILE TYR LEU ASN VAL ASP ASN GLU THR LEU SER          
SEQRES  25 A  457  LYS LEU VAL VAL LYS ARG LEU GLN ASN ASN LYS ALA VAL          
SEQRES  26 A  457  PHE PHE GLY SER HIS THR PRO LYS PHE MET ASP LYS LYS          
SEQRES  27 A  457  THR GLY VAL MET ASP ILE GLU LEU TRP ASN TYR PRO ALA          
SEQRES  28 A  457  ILE GLY TYR ASN LEU PRO GLN GLN LYS ALA SER ARG ILE          
SEQRES  29 A  457  ARG TYR HIS GLU SER LEU MET THR HIS ALA MET LEU ILE          
SEQRES  30 A  457  THR GLY CYS HIS VAL ASP GLU THR SER LYS LEU PRO LEU          
SEQRES  31 A  457  ARG TYR ARG VAL GLU ALA SER TRP GLY LYS ASP SER GLY          
SEQRES  32 A  457  LYS ASP GLY LEU TYR VAL MET THR GLN LYS TYR PHE GLU          
SEQRES  33 A  457  GLU TYR CYS PHE GLN ILE VAL VAL ASP ILE ASN GLU LEU          
SEQRES  34 A  457  PRO LYS GLU LEU ALA SER LYS PHE THR SER GLY LYS GLU          
SEQRES  35 A  457  GLU PRO ILE VAL LEU PRO ILE TRP ASP PRO MET GLY ALA          
SEQRES  36 A  457  LEU ALA                                                      
FORMUL   2  HOH   *187(H2 O)                                                    
HELIX    1   1 PHE A   -3  SER A    4  1                                   8    
HELIX    2   2 ASP A    6  SER A   19  1                                  14    
HELIX    3   3 ASP A   20  TYR A   33  1                                  14    
HELIX    4   4 ASN A   34  LEU A   40  1                                   7    
HELIX    5   5 ASN A   41  ASP A   49  1                                   9    
HELIX    6   6 ARG A   72  ASN A   91  1                                  20    
HELIX    7   7 SER A   98  SER A  121  1                                  24    
HELIX    8   8 SER A  128  ALA A  137  1                                  10    
HELIX    9   9 GLN A  144  GLY A  156  1                                  13    
HELIX   10  10 PRO A  159  TYR A  163  5                                   5    
HELIX   11  11 PRO A  167  THR A  171  5                                   5    
HELIX   12  12 SER A  173  ARG A  198  1                                  26    
HELIX   13  13 ASP A  202  MET A  224  1                                  23    
HELIX   14  14 THR A  252  TYR A  260  1                                   9    
HELIX   15  15 ASP A  303  ASN A  317  1                                  15    
HELIX   16  16 ASN A  344  GLY A  349  5                                   6    
HELIX   17  17 GLN A  355  TYR A  362  1                                   8    
HELIX   18  18 GLN A  408  TYR A  414  1                                   7    
HELIX   19  19 ASN A  423  LEU A  425  5                                   3    
HELIX   20  20 PRO A  426  SER A  435  1                                  10    
SHEET    1   A 6 THR A  55  VAL A  56  0                                        
SHEET    2   A 6 HIS A 369  VAL A 378 -1  O  CYS A 376   N  THR A  55           
SHEET    3   A 6 PRO A 385  GLU A 391 -1  O  GLU A 391   N  LEU A 372           
SHEET    4   A 6 LEU A 403  THR A 407 -1  O  TYR A 404   N  VAL A 390           
SHEET    5   A 6 VAL A 337  MET A 338  1  N  MET A 338   O  VAL A 405           
SHEET    6   A 6 MET A 331  ASP A 332 -1  N  ASP A 332   O  VAL A 337           
SHEET    1   B 8 THR A  55  VAL A  56  0                                        
SHEET    2   B 8 HIS A 369  VAL A 378 -1  O  CYS A 376   N  THR A  55           
SHEET    3   B 8 VAL A 321  SER A 325 -1  N  VAL A 321   O  ILE A 373           
SHEET    4   B 8 CYS A 415  ASP A 421 -1  O  PHE A 416   N  GLY A 324           
SHEET    5   B 8 PRO A 268  ILE A 272 -1  N  VAL A 269   O  VAL A 420           
SHEET    6   B 8 VAL A 297  ASN A 301  1  O  LEU A 300   N  ILE A 272           
SHEET    7   B 8 LEU A 282  ILE A 285 -1  N  ILE A 283   O  TYR A 299           
SHEET    8   B 8 ILE A 441  LEU A 443  1  O  ILE A 441   N  LEU A 282           
SHEET    1   C 2 PHE A 235  VAL A 240  0                                        
SHEET    2   C 2 ILE A 246  SER A 251 -1  O  SER A 251   N  PHE A 235           
CISPEP   1 THR A   62    PRO A   63          0         0.03                     
CISPEP   2 THR A  327    PRO A  328          0        -0.58                     
CRYST1  151.027  151.027   89.669  90.00  90.00 120.00 P 63 2 2     12          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.006621  0.003823  0.000000        0.00000                         
SCALE2      0.000000  0.007646  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.011152        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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