HEADER TRANSFERASE 25-MAY-06 2ITW
TITLE CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AFN941
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 696-1022;
COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1;
COMPND 6 EC: 2.7.10.1;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACG2T
KEYWDS RECEPTOR, CELL CYCLE, ATP-BINDING, TRANSFERASE, TRANSMEMBRANE,
KEYWDS 2 PHOSPHORYLATION, DISEASE MUTATION, POLYMORPHISM, GLYCOPROTEIN, ANTI-
KEYWDS 3 ONCOGENE, NUCLEOTIDE-BINDING, ALTERNATIVE SPLICING, AFN941, EGFR,
KEYWDS 4 KINASE, STAUROSPORINE, MEMBRANE, TYROSINE-PROTEIN KINASE, EPIDERMAL
KEYWDS 5 GROWTH FACTOR
EXPDTA X-RAY DIFFRACTION
AUTHOR C.-H.YUN,T.J.BOGGON,Y.LI,S.WOO,H.GREULICH,M.MEYERSON,M.J.ECK
REVDAT 5 13-DEC-23 2ITW 1 REMARK
REVDAT 4 27-MAR-13 2ITW 1 REMARK VERSN HET HETNAM
REVDAT 4 2 1 HETSYN FORMUL HETATM
REVDAT 3 24-FEB-09 2ITW 1 VERSN
REVDAT 2 29-JAN-08 2ITW 1 SOURCE
REVDAT 1 03-APR-07 2ITW 0
JRNL AUTH C.-H.YUN,T.J.BOGGON,Y.LI,S.WOO,H.GREULICH,M.MEYERSON,M.J.ECK
JRNL TITL STRUCTURES OF LUNG CANCER-DERIVED EGFR MUTANTS AND INHIBITOR
JRNL TITL 2 COMPLEXES: MECHANISM OF ACTIVATION AND INSIGHTS INTO
JRNL TITL 3 DIFFERENTIAL INHIBITOR SENSITIVITY
JRNL REF CANCER CELL V. 11 217 2007
JRNL REFN ISSN 1535-6108
JRNL PMID 17349580
JRNL DOI 10.1016/J.CCR.2006.12.017
REMARK 2
REMARK 2 RESOLUTION. 2.88 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.08
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 10912
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.191
REMARK 3 R VALUE (WORKING SET) : 0.187
REMARK 3 FREE R VALUE : 0.256
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700
REMARK 3 FREE R VALUE TEST SET COUNT : 544
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE SET COUNT : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2395
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 35
REMARK 3 SOLVENT ATOMS : 72
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.10
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.934
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2497 ; 0.017 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3391 ; 1.818 ; 1.999
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.175 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;40.144 ;24.095
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;20.750 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.328 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.109 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1845 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1215 ; 0.262 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1704 ; 0.331 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.187 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.192 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.201 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1498 ; 1.006 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2430 ; 1.925 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 999 ; 2.177 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 960 ; 3.745 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS.
REMARK 4
REMARK 4 2ITW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-06.
REMARK 100 THE DEPOSITION ID IS D_1290028814.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-AUG-05
REMARK 200 TEMPERATURE (KELVIN) : 100.0
REMARK 200 PH : 7.50
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X25
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM-4
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11527
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 7.100
REMARK 200 R MERGE (I) : 0.07000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 7.20
REMARK 200 R MERGE FOR SHELL (I) : 0.40000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 1M14
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M KNA TARTRATE, 0.1M HEPES 7.5, PH
REMARK 280 7.50
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 Z,X,Y
REMARK 290 6555 Z,-X,-Y
REMARK 290 7555 -Z,-X,Y
REMARK 290 8555 -Z,X,-Y
REMARK 290 9555 Y,Z,X
REMARK 290 10555 -Y,Z,-X
REMARK 290 11555 Y,-Z,-X
REMARK 290 12555 -Y,-Z,X
REMARK 290 13555 X+1/2,Y+1/2,Z+1/2
REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290 17555 Z+1/2,X+1/2,Y+1/2
REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2
REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2
REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2
REMARK 290 21555 Y+1/2,Z+1/2,X+1/2
REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2
REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2
REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.22300
REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.22300
REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.22300
REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.22300
REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.22300
REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.22300
REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.22300
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.22300
REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.22300
REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.22300
REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.22300
REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.22300
REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.22300
REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.22300
REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.22300
REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.22300
REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.22300
REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.22300
REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.22300
REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.22300
REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.22300
REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.22300
REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.22300
REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.22300
REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.22300
REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.22300
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A3013 LIES ON A SPECIAL POSITION.
REMARK 400
REMARK 400 COMPOUND
REMARK 400 RECEPTOR FOR EGF, BUT ALSO FOR OTHER MEMBERS OF THE EGF
REMARK 400 FAMILY, AS TGF-ALPHA, AMPHIREGULIN, BETACELLULIN, HEPARIN-BINDING
REMARK 400 EGF-LIKE GROWTH FACTOR, GP30 AND VACCINIA VIRUS GROWTH FACTOR. IS
REMARK 400 INVOLVED IN THE CONTROL OF CELL GROWTH AND DIFFERENTIATION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A 985
REMARK 465 ARG A 986
REMARK 465 MET A 987
REMARK 465 HIS A 988
REMARK 465 LEU A 989
REMARK 465 PRO A 990
REMARK 465 SER A 991
REMARK 465 PRO A 992
REMARK 465 THR A 993
REMARK 465 ASP A 994
REMARK 465 SER A 995
REMARK 465 ASN A 996
REMARK 465 PHE A 997
REMARK 465 TYR A 998
REMARK 465 ARG A 999
REMARK 465 ALA A 1000
REMARK 465 LEU A 1001
REMARK 465 MET A 1002
REMARK 465 ASP A 1003
REMARK 465 GLU A 1004
REMARK 465 GLU A 1005
REMARK 465 ASP A 1006
REMARK 465 PRO A 1019
REMARK 465 GLN A 1020
REMARK 465 GLN A 1021
REMARK 465 GLY A 1022
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ILE A1018 CA C O CB CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU A 778 CA - CB - CG ANGL. DEV. = -14.0 DEGREES
REMARK 500 ARG A 831 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 697 -25.73 -156.73
REMARK 500 ILE A 715 -51.26 -120.63
REMARK 500 LYS A 716 -150.46 -125.07
REMARK 500 VAL A 717 11.49 -143.55
REMARK 500 LEU A 718 -123.49 27.16
REMARK 500 SER A 720 149.83 166.94
REMARK 500 ALA A 722 72.85 -62.10
REMARK 500 PHE A 723 -40.74 162.50
REMARK 500 GLU A 734 -118.77 27.08
REMARK 500 LEU A 747 -39.46 -31.11
REMARK 500 ARG A 748 -21.80 130.06
REMARK 500 GLU A 749 -125.57 99.32
REMARK 500 ALA A 750 101.63 -15.73
REMARK 500 PRO A 753 -23.13 -37.25
REMARK 500 LEU A 782 57.16 -90.27
REMARK 500 LYS A 806 -59.43 -15.03
REMARK 500 ARG A 836 1.30 57.71
REMARK 500 ASP A 837 43.97 -144.45
REMARK 500 ASP A 855 89.50 57.70
REMARK 500 LEU A 858 -19.02 -153.31
REMARK 500 GLU A 865 69.19 18.09
REMARK 500 GLU A 872 -156.85 -81.40
REMARK 500 ILE A 918 129.49 -37.81
REMARK 500 LYS A 929 -18.16 -49.50
REMARK 500
REMARK 500 REMARK: NULL
REMARK 700
REMARK 700 SHEET
REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN
REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,
REMARK 700 TWO SHEETS ARE DEFINED.
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ITQ A 2018
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1DNQ RELATED DB: PDB
REMARK 900 THEORETICAL MODEL OF THE FIRST AND SECOND DOMAINS OF THE HUMAN
REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN
REMARK 900 RELATED ID: 1DNR RELATED DB: PDB
REMARK 900 THEORETICAL MODEL OF THE THIRD AND FOURTH DOMAINS OF THE HUMAN
REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN
REMARK 900 RELATED ID: 1IVO RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN EPIDERMAL GROWTHFACTOR
REMARK 900 AND RECEPTOR EXTRACELLULAR DOMAINS.
REMARK 900 RELATED ID: 1M14 RELATED DB: PDB
REMARK 900 TYROSINE KINASE DOMAIN FROM EPIDERMAL GROWTH FACTOR RECEPTOR
REMARK 900 RELATED ID: 1M17 RELATED DB: PDB
REMARK 900 EPIDERMAL GROWTH FACTOR RECEPTOR TYROSINE KINASE DOMAINWITH 4-
REMARK 900 ANILINOQUINAZOLINE INHIBITOR ERLOTINIB
REMARK 900 RELATED ID: 1MOX RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF HUMAN EPIDERMAL GROWTH FACTOR
REMARK 900 RECEPTOR(RESIDUES 1-501) IN COMPLEX WITH TGF-ALPHA
REMARK 900 RELATED ID: 1NQL RELATED DB: PDB
REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN EPIDERMALGROWTH
REMARK 900 FACTOR (EGF) RECEPTOR IN AN INACTIVE (LOW PH)COMPLEX WITH EGF.
REMARK 900 RELATED ID: 1XKK RELATED DB: PDB
REMARK 900 EGFR KINASE DOMAIN COMPLEXED WITH A QUINAZOLINE INHIBITOR-GW572016
REMARK 900 RELATED ID: 1YY9 RELATED DB: PDB
REMARK 900 STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMALGROWTH FACTOR
REMARK 900 RECEPTOR IN COMPLEX WITH THE FAB FRAGMENT OFCETUXIMAB/ERBITUX/ IMC-
REMARK 900 C225
REMARK 900 RELATED ID: 1Z9I RELATED DB: PDB
REMARK 900 A STRUCTURAL MODEL FOR THE MEMBRANE-BOUND FORM OF THEJUXTAMEMBRANE
REMARK 900 DOMAIN OF THE EPIDERMAL GROWTH FACTORRECEPTOR
REMARK 900 RELATED ID: 2ITN RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX
REMARK 900 WITH AMP-PNP
REMARK 900 RELATED ID: 2ITO RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX
REMARK 900 WITH IRESSA
REMARK 900 RELATED ID: 2ITP RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX
REMARK 900 WITH AEE788
REMARK 900 RELATED ID: 2ITQ RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX
REMARK 900 WITH AFN941
REMARK 900 RELATED ID: 2ITT RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX
REMARK 900 WITH AEE788
REMARK 900 RELATED ID: 2ITU RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX
REMARK 900 WITH AFN941
REMARK 900 RELATED ID: 2ITV RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX
REMARK 900 WITH AMP-PNP
REMARK 900 RELATED ID: 2ITX RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AMP-PNP
REMARK 900 RELATED ID: 2ITY RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH IRESSA
REMARK 900 RELATED ID: 2ITZ RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX
REMARK 900 WITH IRESSA
DBREF 2ITW A 696 1022 UNP P00533 EGFR_HUMAN 696 1022
SEQRES 1 A 327 GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU LYS
SEQRES 2 A 327 GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER GLY
SEQRES 3 A 327 ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO GLU
SEQRES 4 A 327 GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU LEU
SEQRES 5 A 327 ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE LEU
SEQRES 6 A 327 ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO HIS
SEQRES 7 A 327 VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR VAL
SEQRES 8 A 327 GLN LEU ILE THR GLN LEU MET PRO PHE GLY CYS LEU LEU
SEQRES 9 A 327 ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER GLN
SEQRES 10 A 327 TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY MET
SEQRES 11 A 327 ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP LEU
SEQRES 12 A 327 ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS VAL
SEQRES 13 A 327 LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY ALA
SEQRES 14 A 327 GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL PRO
SEQRES 15 A 327 ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG ILE
SEQRES 16 A 327 TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR
SEQRES 17 A 327 VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR ASP
SEQRES 18 A 327 GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU LYS
SEQRES 19 A 327 GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE ASP
SEQRES 20 A 327 VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP ALA
SEQRES 21 A 327 ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU PHE
SEQRES 22 A 327 SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL ILE
SEQRES 23 A 327 GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR ASP
SEQRES 24 A 327 SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP MET
SEQRES 25 A 327 ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO GLN
SEQRES 26 A 327 GLN GLY
HET ITQ A2018 35
HETNAM ITQ 1,2,3,4-TETRAHYDROGEN STAUROSPORINE
HETSYN ITQ STAUROSPORINE ANALOGUE - AFN941
FORMUL 2 ITQ C28 H28 N4 O3
FORMUL 3 HOH *72(H2 O)
HELIX 1 1 LYS A 708 THR A 710 5 3
HELIX 2 2 SER A 752 SER A 768 1 17
HELIX 3 3 CYS A 797 LYS A 806 1 10
HELIX 4 4 ASP A 807 ILE A 809 5 3
HELIX 5 5 GLY A 810 ARG A 831 1 22
HELIX 6 6 ALA A 839 ARG A 841 5 3
HELIX 7 7 PRO A 877 MET A 881 5 5
HELIX 8 8 ALA A 882 ARG A 889 1 8
HELIX 9 9 THR A 892 THR A 909 1 18
HELIX 10 10 GLU A 922 LYS A 929 1 8
HELIX 11 11 THR A 940 TRP A 951 1 12
HELIX 12 12 LYS A 960 ARG A 973 1 14
HELIX 13 13 ASP A 974 TYR A 978 5 5
HELIX 14 14 ASP A 1012 TYR A 1016 5 5
SHEET 1 AA 3 PHE A 712 LYS A 714 0
SHEET 2 AA 3 GLY A 724 TRP A 731 -1 O LEU A 730 N LYS A 713
SHEET 3 AA 3 SER A 720 GLY A 721 -1 N GLY A 721 O GLY A 724
SHEET 1 AB 5 PHE A 712 LYS A 714 0
SHEET 2 AB 5 GLY A 724 TRP A 731 -1 O LEU A 730 N LYS A 713
SHEET 3 AB 5 ILE A 740 GLU A 746 -1 O ILE A 740 N TRP A 731
SHEET 4 AB 5 VAL A 786 GLN A 791 -1 O LEU A 788 N LYS A 745
SHEET 5 AB 5 LEU A 777 LEU A 782 -1 N LEU A 778 O ILE A 789
SHEET 1 AC 2 LEU A 833 VAL A 834 0
SHEET 2 AC 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834
SHEET 1 AD 2 VAL A 843 THR A 847 0
SHEET 2 AD 2 HIS A 850 ILE A 853 -1 O HIS A 850 N LYS A 846
SHEET 1 AE 2 TYR A 869 HIS A 870 0
SHEET 2 AE 2 ILE A 890 TYR A 891 -1 O TYR A 891 N TYR A 869
SITE 1 AC1 10 LEU A 718 GLY A 719 SER A 720 VAL A 726
SITE 2 AC1 10 ALA A 743 LEU A 792 MET A 793 PRO A 794
SITE 3 AC1 10 HOH A3020 HOH A3072
CRYST1 144.446 144.446 144.446 90.00 90.00 90.00 I 2 3 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006923 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006923 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006923 0.00000
(ATOM LINES ARE NOT SHOWN.)
END
