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Database: PDB
Entry: 3ADS
LinkDB: 3ADS
Original site: 3ADS 
HEADER    TRANSCRIPTION                           29-JAN-10   3ADS              
TITLE     HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH INDOMETHACIN    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA;          
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: LIGAND-BINDING DOMAIN, RESIDUES IN UNP 223-505;            
COMPND   5 SYNONYM: PPAR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3;  
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PPARGAMMA;                                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET28A                                    
KEYWDS    NUCLEAR RECEPTOR, LIGAND-DEPENDENT TRANSCRIPTION FACTOR, LIGAND-      
KEYWDS   2 BINDING DOMAIN, ACTIVATOR, DIABETES MELLITUS, DISEASE MUTATION, DNA- 
KEYWDS   3 BINDING, METAL-BINDING, NUCLEUS, OBESITY, PHOSPHOPROTEIN, RECEPTOR,  
KEYWDS   4 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC-FINGER                 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    T.WAKU,T.SHIRAKI,T.OYAMA,K.MORIKAWA                                   
REVDAT   2   01-NOV-23 3ADS    1       REMARK SEQADV                            
REVDAT   1   22-DEC-10 3ADS    0                                                
JRNL        AUTH   T.WAKU,T.SHIRAKI,T.OYAMA,K.MAEBARA,R.NAKAMORI,K.MORIKAWA     
JRNL        TITL   THE NUCLEAR RECEPTOR PPARGAMMA INDIVIDUALLY RESPONDS TO      
JRNL        TITL 2 SEROTONIN- AND FATTY ACID-METABOLITES                        
JRNL        REF    EMBO J.                       V.  29  3395 2010              
JRNL        REFN                   ISSN 0261-4189                               
JRNL        PMID   20717101                                                     
JRNL        DOI    10.1038/EMBOJ.2010.197                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.25 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 45.30                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 92.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 28608                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.228                           
REMARK   3   FREE R VALUE                     : 0.277                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 1407                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.25                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.39                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2740                       
REMARK   3   BIN FREE R VALUE                    : 0.3240                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 214                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.022                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4098                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 75                                      
REMARK   3   SOLVENT ATOMS            : 97                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.30                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.26                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : NULL                            
REMARK   3   BOND ANGLES            (DEGREES) : NULL                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : NULL                            
REMARK   3   IMPROPER ANGLES        (DEGREES) : NULL                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : NULL                                                 
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3ADS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000029126.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-NOV-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL38B1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00000                            
REMARK 200  MONOCHROMATOR                  : FIXED EXIT SI 111 DOUBLE CRYSTAL   
REMARK 200                                   MONOCHROMATOR                      
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU JUPITER 210                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 29605                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.250                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.6                               
REMARK 200  DATA REDUNDANCY                : 3.500                              
REMARK 200  R MERGE                    (I) : 0.07200                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 20.1000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.33                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.10                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.27500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: 1PRG                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 50.90                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.8M SODIUM CITRATE, PH      
REMARK 280  7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       46.52250            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       30.51550            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       46.52250            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       30.51550            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 25400 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   2  1.000000  0.000000  0.000000      -46.52250            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000       30.51550            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   191                                                      
REMARK 465     SER A   192                                                      
REMARK 465     HIS A   193                                                      
REMARK 465     MET A   194                                                      
REMARK 465     ALA A   195                                                      
REMARK 465     GLU A   196                                                      
REMARK 465     ILE A   197                                                      
REMARK 465     SER A   198                                                      
REMARK 465     SER A   199                                                      
REMARK 465     ASP A   200                                                      
REMARK 465     ILE A   201                                                      
REMARK 465     ASP A   202                                                      
REMARK 465     PHE A   264                                                      
REMARK 465     LYS A   265                                                      
REMARK 465     HIS A   266                                                      
REMARK 465     ILE A   267                                                      
REMARK 465     THR A   268                                                      
REMARK 465     PRO A   269                                                      
REMARK 465     LEU A   270                                                      
REMARK 465     GLN A   271                                                      
REMARK 465     GLU A   272                                                      
REMARK 465     GLN A   273                                                      
REMARK 465     SER A   274                                                      
REMARK 465     LYS A   275                                                      
REMARK 465     TYR A   477                                                      
REMARK 465     GLY B   191                                                      
REMARK 465     SER B   192                                                      
REMARK 465     HIS B   193                                                      
REMARK 465     MET B   194                                                      
REMARK 465     ALA B   195                                                      
REMARK 465     GLU B   196                                                      
REMARK 465     ILE B   197                                                      
REMARK 465     SER B   198                                                      
REMARK 465     SER B   199                                                      
REMARK 465     ASP B   200                                                      
REMARK 465     ILE B   201                                                      
REMARK 465     ASP B   202                                                      
REMARK 465     GLN B   203                                                      
REMARK 465     LEU B   204                                                      
REMARK 465     ASN B   205                                                      
REMARK 465     PRO B   206                                                      
REMARK 465     THR B   241                                                      
REMARK 465     THR B   242                                                      
REMARK 465     ASP B   243                                                      
REMARK 465     HIS B   266                                                      
REMARK 465     ILE B   267                                                      
REMARK 465     THR B   268                                                      
REMARK 465     PRO B   269                                                      
REMARK 465     LEU B   270                                                      
REMARK 465     GLN B   271                                                      
REMARK 465     GLU B   272                                                      
REMARK 465     GLN B   273                                                      
REMARK 465     SER B   274                                                      
REMARK 465     ASP B   462                                                      
REMARK 465     MET B   463                                                      
REMARK 465     SER B   464                                                      
REMARK 465     LEU B   465                                                      
REMARK 465     LYS B   474                                                      
REMARK 465     ASP B   475                                                      
REMARK 465     LEU B   476                                                      
REMARK 465     TYR B   477                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLN A 203    CG   CD   OE1  NE2                                  
REMARK 470     LEU A 204    CG   CD1  CD2                                       
REMARK 470     ASN A 205    CG   OD1  ND2                                       
REMARK 470     PRO A 206    CG   CD                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    THR A   242     N    LYS A   244              2.13            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    THR A 242      167.28    -44.07                                   
REMARK 500    ASP A 243       26.72    -55.06                                   
REMARK 500    LYS A 358      -62.89    -14.30                                   
REMARK 500    SER A 394      -76.87    -70.34                                   
REMARK 500    SER A 464     -151.00    -80.61                                   
REMARK 500    LEU A 465      114.17    167.50                                   
REMARK 500    ASP A 475       18.32     57.24                                   
REMARK 500    LYS B 263      100.35     60.59                                   
REMARK 500    PHE B 264     -141.86    -91.88                                   
REMARK 500    GLU B 276      104.94     78.80                                   
REMARK 500    SER B 342       64.89     39.58                                   
REMARK 500    ARG B 357     -160.74    -72.54                                   
REMARK 500    LYS B 358     -137.54     30.28                                   
REMARK 500    LYS B 457       26.36    -64.99                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMN A 1                   
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMN A 2                   
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMN B 3                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3ADT   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN COMPLEX WITH 5-HYDROXY-INDOLE ACETATE               
REMARK 900 RELATED ID: 3ADU   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN COMPLEX WITH 5-METHOXY-INDOLE ACETATE               
REMARK 900 RELATED ID: 3ADV   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN COMPLEX WITH SEROTONIN                              
REMARK 900 RELATED ID: 3ADW   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN COMPLEX WITH 5-METHOXY-INDOLE ACETATE AND 15-OXO-   
REMARK 900 EICOSATETRAENOIC ACID                                                
REMARK 900 RELATED ID: 3ADX   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN COMPLEX WITH INDOMETHACIN AND NITRO-233             
DBREF  3ADS A  195   477  UNP    P37231   PPARG_HUMAN    223    505             
DBREF  3ADS B  195   477  UNP    P37231   PPARG_HUMAN    223    505             
SEQADV 3ADS GLY A  191  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS SER A  192  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS HIS A  193  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS MET A  194  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS GLY B  191  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS SER B  192  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS HIS B  193  UNP  P37231              EXPRESSION TAG                 
SEQADV 3ADS MET B  194  UNP  P37231              EXPRESSION TAG                 
SEQRES   1 A  287  GLY SER HIS MET ALA GLU ILE SER SER ASP ILE ASP GLN          
SEQRES   2 A  287  LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS          
SEQRES   3 A  287  HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR          
SEQRES   4 A  287  LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR          
SEQRES   5 A  287  ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU          
SEQRES   6 A  287  MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR          
SEQRES   7 A  287  PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE          
SEQRES   8 A  287  PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN          
SEQRES   9 A  287  GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL          
SEQRES  10 A  287  ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR          
SEQRES  11 A  287  GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU          
SEQRES  12 A  287  MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY          
SEQRES  13 A  287  PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO          
SEQRES  14 A  287  PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL          
SEQRES  15 A  287  LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA          
SEQRES  16 A  287  ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO          
SEQRES  17 A  287  GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP          
SEQRES  18 A  287  ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN          
SEQRES  19 A  287  HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN          
SEQRES  20 A  287  LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL          
SEQRES  21 A  287  GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET          
SEQRES  22 A  287  SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU          
SEQRES  23 A  287  TYR                                                          
SEQRES   1 B  287  GLY SER HIS MET ALA GLU ILE SER SER ASP ILE ASP GLN          
SEQRES   2 B  287  LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS          
SEQRES   3 B  287  HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR          
SEQRES   4 B  287  LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR          
SEQRES   5 B  287  ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU          
SEQRES   6 B  287  MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR          
SEQRES   7 B  287  PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE          
SEQRES   8 B  287  PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN          
SEQRES   9 B  287  GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL          
SEQRES  10 B  287  ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR          
SEQRES  11 B  287  GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU          
SEQRES  12 B  287  MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY          
SEQRES  13 B  287  PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO          
SEQRES  14 B  287  PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL          
SEQRES  15 B  287  LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA          
SEQRES  16 B  287  ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO          
SEQRES  17 B  287  GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP          
SEQRES  18 B  287  ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN          
SEQRES  19 B  287  HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN          
SEQRES  20 B  287  LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL          
SEQRES  21 B  287  GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET          
SEQRES  22 B  287  SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU          
SEQRES  23 B  287  TYR                                                          
HET    IMN  A   1      25                                                       
HET    IMN  A   2      25                                                       
HET    IMN  B   3      25                                                       
HETNAM     IMN INDOMETHACIN                                                     
FORMUL   3  IMN    3(C19 H16 CL N O4)                                           
FORMUL   6  HOH   *97(H2 O)                                                     
HELIX    1   1 ASN A  205  PHE A  226  1                                  22    
HELIX    2   2 THR A  229  GLY A  239  1                                  11    
HELIX    3   3 ASP A  251  ILE A  262  1                                  12    
HELIX    4   4 GLU A  276  ILE A  303  1                                  28    
HELIX    5   5 ASP A  310  ALA A  331  1                                  22    
HELIX    6   6 ARG A  350  SER A  355  1                                   6    
HELIX    7   7 PRO A  359  PHE A  363  5                                   5    
HELIX    8   8 MET A  364  ASN A  375  1                                  12    
HELIX    9   9 ALA A  376  GLU A  378  5                                   3    
HELIX   10  10 ASP A  380  LEU A  393  1                                  14    
HELIX   11  11 ASN A  402  HIS A  425  1                                  24    
HELIX   12  12 GLN A  430  GLU A  460  1                                  31    
HELIX   13  13 HIS A  466  LYS A  474  1                                   9    
HELIX   14  14 GLU B  207  PHE B  226  1                                  20    
HELIX   15  15 THR B  229  GLY B  239  1                                  11    
HELIX   16  16 ASP B  251  ILE B  262  1                                  12    
HELIX   17  17 GLU B  276  LYS B  301  1                                  26    
HELIX   18  18 GLY B  305  LEU B  309  5                                   5    
HELIX   19  19 ASP B  310  LEU B  333  1                                  24    
HELIX   20  20 ARG B  350  SER B  355  1                                   6    
HELIX   21  21 PRO B  359  PHE B  363  5                                   5    
HELIX   22  22 MET B  364  ALA B  376  1                                  13    
HELIX   23  23 ASP B  380  LEU B  393  1                                  14    
HELIX   24  24 ASN B  402  HIS B  425  1                                  24    
HELIX   25  25 GLN B  430  LYS B  457  1                                  28    
HELIX   26  26 HIS B  466  TYR B  473  1                                   8    
SHEET    1   A 4 PHE A 247  ILE A 249  0                                        
SHEET    2   A 4 GLY A 346  THR A 349  1  O  PHE A 347   N  ILE A 249           
SHEET    3   A 4 GLY A 338  ILE A 341 -1  N  VAL A 339   O  MET A 348           
SHEET    4   A 4 MET A 334  ASN A 335 -1  N  ASN A 335   O  GLY A 338           
SHEET    1   B 4 PHE B 247  ILE B 249  0                                        
SHEET    2   B 4 GLY B 346  THR B 349  1  O  THR B 349   N  ILE B 249           
SHEET    3   B 4 GLY B 338  ILE B 341 -1  N  VAL B 339   O  MET B 348           
SHEET    4   B 4 MET B 334  ASN B 335 -1  N  ASN B 335   O  GLY B 338           
SITE     1 AC1 10 ARG A 280  GLY A 284  CYS A 285  ARG A 288                    
SITE     2 AC1 10 LEU A 330  LEU A 340  ILE A 341  SER A 342                    
SITE     3 AC1 10 MET A 348  MET A 364                                          
SITE     1 AC2 15 ILE A 281  PHE A 282  CYS A 285  SER A 289                    
SITE     2 AC2 15 HIS A 323  TYR A 327  LEU A 330  LEU A 356                    
SITE     3 AC2 15 PHE A 360  PHE A 363  MET A 364  HIS A 449                    
SITE     4 AC2 15 LEU A 453  LEU A 469  TYR A 473                               
SITE     1 AC3 11 ILE B 281  ARG B 288  SER B 289  ALA B 292                    
SITE     2 AC3 11 ILE B 326  LEU B 330  LEU B 333  LEU B 340                    
SITE     3 AC3 11 ILE B 341  GLU B 343  MET B 364                               
CRYST1   93.045   61.031  118.403  90.00 102.99  90.00 C 1 2 1       8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010747  0.000000  0.002479        0.00000                         
SCALE2      0.000000  0.016385  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008668        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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