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Database: PDB
Entry: 3NP5
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Original site: 3NP5 
HEADER    HYDROLASE                               27-JUN-10   3NP5              
TITLE     CRYSTAL STRUCTURE OF AN ABRIDGED FORM OF THE MATURE ECTODOMAIN OF THE 
TITLE    2 HUMAN RECEPTOR-TYPE PROTEIN TYROSINE PHOSPHATASE ICA512/IA-2 AT PH   
TITLE    3 4.5                                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE-LIKE N;         
COMPND   3 CHAIN: A, B, C, D;                                                   
COMPND   4 FRAGMENT: UNP RESIDUES 470-558;                                      
COMPND   5 SYNONYM: R-PTP-N, ISLET CELL ANTIGEN 512, ICA 512, ISLET CELL        
COMPND   6 AUTOANTIGEN 3, PTP IA-2;                                             
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ICA3, ICA512, PTPRN;                                           
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS;                            
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET9B                                     
KEYWDS    IA-2, ICA-512, PROTEIN-TYROSINE PHOSPHATASE, TRANSMEMBRANE PROTEIN,   
KEYWDS   2 DIABETES, AUTOIMMUNITY, PROTEOLYSIS, GLYCOPROTEIN, RECEPTOR,         
KEYWDS   3 HYDROLASE                                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.E.PRIMO,J.JAKONCIC,E.POSKUS,M.R.ERMACORA                            
REVDAT   3   18-APR-12 3NP5    1       SHEET  VERSN                             
REVDAT   2   12-JAN-11 3NP5    1       COMPND DBREF                             
REVDAT   1   29-DEC-10 3NP5    0                                                
JRNL        AUTH   M.E.PRIMO,J.JAKONCIC,E.POSKUS,M.R.ERMACORA                   
JRNL        TITL   RECEPTOR-TYPE PROTEIN-TYROSINE PHOSPHATASE IA-2-ICA512       
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   M.E.PRIMO,S.KLINKE,M.P.SICA,F.A.GOLDBAUM,J.JAKONCIC,         
REMARK   1  AUTH 2 E.POSKUS,M.R.ERMACORA                                        
REMARK   1  TITL   STRUCTURE OF THE MATURE ECTODOMAIN OF THE HUMAN              
REMARK   1  TITL 2 RECEPTOR-TYPE PROTEIN-TYROSINE PHOSPHATASE IA-2              
REMARK   1  REF    J.BIOL.CHEM.                  V. 283  4674 2008              
REMARK   1  REFN                   ISSN 0021-9258                               
REMARK   1  PMID   18048354                                                     
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.5.0109                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ENGH & HUBER                                  
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.84                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 92.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 26639                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : NULL                            
REMARK   3   R VALUE            (WORKING SET) : 0.161                           
REMARK   3   FREE R VALUE                     : 0.239                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1390                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.80                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.85                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 74.00                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2500                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 66                           
REMARK   3   BIN FREE R VALUE                    : 0.4140                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2679                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 2                                       
REMARK   3   SOLVENT ATOMS            : 132                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 22.30                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 20.89                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -4.95000                                             
REMARK   3    B22 (A**2) : -4.95000                                             
REMARK   3    B33 (A**2) : 9.89000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): NULL          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): NULL          
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): NULL          
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL          
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : NULL                          
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : NULL                          
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  NULL ; 0.022 ;  NULL       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  NULL ; 1.968 ;  NULL       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):  NULL ; 5.000 ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):  NULL ;25.902 ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):  NULL ; 0.200 ;  NULL       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : NULL                                          
REMARK   3   ION PROBE RADIUS   : NULL                                          
REMARK   3   SHRINKAGE RADIUS   : NULL                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3NP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-10.                  
REMARK 100 THE RCSB ID CODE IS RCSB060104.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-MAR-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100.000000                         
REMARK 200  PH                             : 4.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X6A                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9537                             
REMARK 200  MONOCHROMATOR                  : SI (111) CHANNEL CUT               
REMARK 200                                   MONOCHROMATOR                      
REMARK 200  OPTICS                         : TOROIDAL FOCUSING MIRROR           
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 270                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 28186                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 91.9                               
REMARK 200  DATA REDUNDANCY                : 5.300                              
REMARK 200  R MERGE                    (I) : 0.04200                            
REMARK 200  R SYM                      (I) : 0.04200                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 40.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.83                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 73.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.10                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.22600                            
REMARK 200  R SYM FOR SHELL            (I) : 0.22600                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2QT7                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.70                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 4000, 0.1 M ACNA/ACH, PH   
REMARK 280  4.50.2 M CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP,           
REMARK 280  TEMPERATURE 292K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y,X,Z+1/4                                              
REMARK 290       4555   Y,-X,Z+3/4                                              
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       84.33250            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       42.16625            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      126.49875            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2, 3                                                 
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 8930 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C                                     
REMARK 350   BIOMT1   2  1.000000  0.000000  0.000000       44.66200            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 3                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 9330 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D                                     
REMARK 350   BIOMT1   2  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000      -44.66200            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ARG A   557                                                      
REMARK 465     GLU A   558                                                      
REMARK 465     GLU C   558                                                      
REMARK 480                                                                      
REMARK 480 ZERO OCCUPANCY ATOM                                                  
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO                  
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS                
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;              
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 480   M RES C SSEQI ATOMS                                                
REMARK 480     HIS A  520   CB   CG   ND1  CD2  CE1  NE2                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH B   636     O    HOH B   644              1.60            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    HIS B 520       99.03    -50.01                                   
REMARK 500    ASN C 524       -7.21     97.75                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                             
REMARK 500                                                                      
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                     
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                      
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                        
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                    
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                            
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                   
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)       
REMARK 500                                                                      
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                 
REMARK 500    ASN C 524        22.9      L          L   OUTSIDE RANGE           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH C 662        DISTANCE =  5.13 ANGSTROMS                       
REMARK 525    HOH D 669        DISTANCE =  5.96 ANGSTROMS                       
REMARK 525    HOH D 726        DISTANCE =  6.82 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 732  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP C 529   OD1                                                    
REMARK 620 2 GLN A 532   OE1  91.9                                              
REMARK 620 3 ASP C 529   OD2  55.3  88.0                                        
REMARK 620 4 HOH B 693   O   130.2  96.1  75.9                                  
REMARK 620 5 ASP A 529   OD1  84.8 101.2 139.4 140.4                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA D 732  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 SER D 500   OG                                                     
REMARK 620 2 HOH D 723   O    67.8                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 732                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 732                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2QT7   RELATED DB: PDB                                   
REMARK 900 A WILD-TYPE SIMILAR FRAGMENT                                         
REMARK 900 RELATED ID: 3N0I   RELATED DB: PDB                                   
REMARK 900 A WILD-TYPE SIMILAR FRAGMENT                                         
REMARK 900 RELATED ID: 3NG8   RELATED DB: PDB                                   
REMARK 900 SER TO ALA MUTANT OF A SIMILAR FRAGMENT AT PH 8.5                    
REMARK 900 RELATED ID: 3N4W   RELATED DB: PDB                                   
REMARK 900 SER TO ALA MUTANT OF A SIMILAR FRAGMENT AT PH 7.5                    
DBREF  3NP5 A  470   558  UNP    Q16849   PTPRN_HUMAN    470    558             
DBREF  3NP5 B  470   558  UNP    Q16849   PTPRN_HUMAN    470    558             
DBREF  3NP5 C  470   558  UNP    Q16849   PTPRN_HUMAN    470    558             
DBREF  3NP5 D  470   558  UNP    Q16849   PTPRN_HUMAN    470    558             
SEQRES   1 A   89  GLU TYR GLY TYR ILE VAL THR ASP GLN LYS PRO LEU SER          
SEQRES   2 A   89  LEU ALA ALA GLY VAL LYS LEU LEU GLU ILE LEU ALA GLU          
SEQRES   3 A   89  HIS VAL HIS MET SER SER GLY SER PHE ILE ASN ILE SER          
SEQRES   4 A   89  VAL VAL GLY PRO ALA LEU THR PHE ARG ILE ARG HIS ASN          
SEQRES   5 A   89  GLU GLN ASN LEU SER LEU ALA ASP VAL THR GLN GLN ALA          
SEQRES   6 A   89  GLY LEU VAL LYS SER GLU LEU GLU ALA GLN THR GLY LEU          
SEQRES   7 A   89  GLN ILE LEU GLN THR GLY VAL GLY GLN ARG GLU                  
SEQRES   1 B   89  GLU TYR GLY TYR ILE VAL THR ASP GLN LYS PRO LEU SER          
SEQRES   2 B   89  LEU ALA ALA GLY VAL LYS LEU LEU GLU ILE LEU ALA GLU          
SEQRES   3 B   89  HIS VAL HIS MET SER SER GLY SER PHE ILE ASN ILE SER          
SEQRES   4 B   89  VAL VAL GLY PRO ALA LEU THR PHE ARG ILE ARG HIS ASN          
SEQRES   5 B   89  GLU GLN ASN LEU SER LEU ALA ASP VAL THR GLN GLN ALA          
SEQRES   6 B   89  GLY LEU VAL LYS SER GLU LEU GLU ALA GLN THR GLY LEU          
SEQRES   7 B   89  GLN ILE LEU GLN THR GLY VAL GLY GLN ARG GLU                  
SEQRES   1 C   89  GLU TYR GLY TYR ILE VAL THR ASP GLN LYS PRO LEU SER          
SEQRES   2 C   89  LEU ALA ALA GLY VAL LYS LEU LEU GLU ILE LEU ALA GLU          
SEQRES   3 C   89  HIS VAL HIS MET SER SER GLY SER PHE ILE ASN ILE SER          
SEQRES   4 C   89  VAL VAL GLY PRO ALA LEU THR PHE ARG ILE ARG HIS ASN          
SEQRES   5 C   89  GLU GLN ASN LEU SER LEU ALA ASP VAL THR GLN GLN ALA          
SEQRES   6 C   89  GLY LEU VAL LYS SER GLU LEU GLU ALA GLN THR GLY LEU          
SEQRES   7 C   89  GLN ILE LEU GLN THR GLY VAL GLY GLN ARG GLU                  
SEQRES   1 D   89  GLU TYR GLY TYR ILE VAL THR ASP GLN LYS PRO LEU SER          
SEQRES   2 D   89  LEU ALA ALA GLY VAL LYS LEU LEU GLU ILE LEU ALA GLU          
SEQRES   3 D   89  HIS VAL HIS MET SER SER GLY SER PHE ILE ASN ILE SER          
SEQRES   4 D   89  VAL VAL GLY PRO ALA LEU THR PHE ARG ILE ARG HIS ASN          
SEQRES   5 D   89  GLU GLN ASN LEU SER LEU ALA ASP VAL THR GLN GLN ALA          
SEQRES   6 D   89  GLY LEU VAL LYS SER GLU LEU GLU ALA GLN THR GLY LEU          
SEQRES   7 D   89  GLN ILE LEU GLN THR GLY VAL GLY GLN ARG GLU                  
HET     CA  A 732       1                                                       
HET     CA  D 732       1                                                       
HETNAM      CA CALCIUM ION                                                      
FORMUL   5   CA    2(CA 2+)                                                     
FORMUL   7  HOH   *132(H2 O)                                                    
HELIX    1   1 SER A  482  VAL A  497  1                                  16    
HELIX    2   2 SER A  500  GLY A  502  5                                   3    
HELIX    3   3 SER A  526  VAL A  537  1                                  12    
HELIX    4   4 VAL A  537  GLY A  546  1                                  10    
HELIX    5   5 SER B  482  VAL B  497  1                                  16    
HELIX    6   6 SER B  500  GLY B  502  5                                   3    
HELIX    7   7 SER B  526  VAL B  537  1                                  12    
HELIX    8   8 VAL B  537  GLY B  546  1                                  10    
HELIX    9   9 SER C  482  VAL C  497  1                                  16    
HELIX   10  10 SER C  500  GLY C  502  5                                   3    
HELIX   11  11 SER C  526  VAL C  537  1                                  12    
HELIX   12  12 VAL C  537  GLY C  546  1                                  10    
HELIX   13  13 SER D  482  VAL D  497  1                                  16    
HELIX   14  14 SER D  500  GLY D  502  5                                   3    
HELIX   15  15 SER D  526  VAL D  537  1                                  12    
HELIX   16  16 VAL D  537  GLY D  546  1                                  10    
SHEET    1   A 8 PHE A 504  VAL A 510  0                                        
SHEET    2   A 8 ALA A 513  ILE A 518 -1  O  ALA A 513   N  VAL A 510           
SHEET    3   A 8 TYR A 471  THR A 476 -1  N  GLY A 472   O  PHE A 516           
SHEET    4   A 8 ILE A 549  GLN A 556 -1  O  LEU A 550   N  VAL A 475           
SHEET    5   A 8 ILE B 549  GLU B 558 -1  O  GLU B 558   N  THR A 552           
SHEET    6   A 8 TYR B 471  THR B 476 -1  N  VAL B 475   O  GLN B 551           
SHEET    7   A 8 ALA B 513  ILE B 518 -1  O  PHE B 516   N  GLY B 472           
SHEET    8   A 8 PHE B 504  VAL B 510 -1  N  SER B 508   O  THR B 515           
SHEET    1   B 8 PHE C 504  VAL C 510  0                                        
SHEET    2   B 8 ALA C 513  ILE C 518 -1  O  ALA C 513   N  VAL C 510           
SHEET    3   B 8 TYR C 471  THR C 476 -1  N  ILE C 474   O  LEU C 514           
SHEET    4   B 8 ILE C 549  GLN C 556 -1  O  GLY C 555   N  TYR C 471           
SHEET    5   B 8 ILE D 549  ARG D 557 -1  O  GLN D 556   N  THR C 552           
SHEET    6   B 8 TYR D 471  THR D 476 -1  N  VAL D 475   O  LEU D 550           
SHEET    7   B 8 ALA D 513  ILE D 518 -1  O  PHE D 516   N  GLY D 472           
SHEET    8   B 8 PHE D 504  VAL D 510 -1  N  ILE D 505   O  ARG D 517           
LINK         OD1 ASP C 529                CA    CA A 732     1555   1555  2.32  
LINK         OE1 GLN A 532                CA    CA A 732     1555   1555  2.34  
LINK         OD2 ASP C 529                CA    CA A 732     1555   1555  2.41  
LINK        CA    CA A 732                 O   HOH B 693     1555   1555  2.46  
LINK         OD1 ASP A 529                CA    CA A 732     1555   1555  2.54  
LINK         OG  SER D 500                CA    CA D 732     1555   1555  2.74  
LINK        CA    CA D 732                 O   HOH D 723     1555   1555  2.93  
CISPEP   1 LYS A  479    PRO A  480          0         7.73                     
CISPEP   2 LYS B  479    PRO B  480          0         1.77                     
CISPEP   3 LYS C  479    PRO C  480          0       -10.02                     
CISPEP   4 LYS D  479    PRO D  480          0        -7.07                     
SITE     1 AC1  4 ASP A 529  GLN A 532  HOH B 693  ASP C 529                    
SITE     1 AC2  6 LEU B 483  HOH B 681  ALA C 543  SER D 500                    
SITE     2 AC2  6 GLY D 502  HOH D 723                                          
CRYST1   44.662   44.662  168.665  90.00  90.00  90.00 P 41         16          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.022390  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.022390  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.005929        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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