GenomeNet

Database: PDB
Entry: 4CG7
LinkDB: 4CG7
Original site: 4CG7 
HEADER    PROTEIN TRANSPORT                       21-NOV-13   4CG7              
TITLE     CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1;   
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: SEC61 ALPHA-1;                                              
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA;             
COMPND   7 CHAIN: B;                                                            
COMPND   8 MOL_ID: 3;                                                           
COMPND   9 MOLECULE: TRANSPORT PROTEIN SEC61 SUBUNIT BETA;                      
COMPND  10 CHAIN: C                                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS;                         
SOURCE   3 ORGANISM_COMMON: DOG;                                                
SOURCE   4 ORGANISM_TAXID: 9615;                                                
SOURCE   5 ORGAN: PANCREAS;                                                     
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS;                         
SOURCE   8 ORGANISM_COMMON: DOG;                                                
SOURCE   9 ORGANISM_TAXID: 9615;                                                
SOURCE  10 ORGAN: PANCREAS;                                                     
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS;                         
SOURCE  13 ORGANISM_COMMON: DOG;                                                
SOURCE  14 ORGANISM_TAXID: 9615;                                                
SOURCE  15 ORGAN: PANCREAS                                                      
KEYWDS    PROTEIN TRANSPORT, CO-TRANSLATIONAL PROTEIN TRANSLOCATION             
EXPDTA    ELECTRON MICROSCOPY                                                   
AUTHOR    M.GOGALA,T.BECKER,B.BEATRIX,C.BARRIO-GARCIA,O.BERNINGHAUSEN,          
AUTHOR   2 R.BECKMANN                                                           
REVDAT   4   30-AUG-17 4CG7    1       REMARK                                   
REVDAT   3   19-FEB-14 4CG7    1       JRNL                                     
REVDAT   2   12-FEB-14 4CG7    1       JRNL                                     
REVDAT   1   05-FEB-14 4CG7    0                                                
JRNL        AUTH   M.GOGALA,T.BECKER,B.BEATRIX,J.ARMACHE,C.BARRIO-GARCIA,       
JRNL        AUTH 2 O.BERNINGHAUSEN,R.BECKMANN                                   
JRNL        TITL   STRUCTURES OF THE SEC61 COMPLEX ENGAGED IN NASCENT PEPTIDE   
JRNL        TITL 2 TRANSLOCATION OR MEMBRANE INSERTION.                         
JRNL        REF    NATURE                        V. 506   107 2014              
JRNL        REFN                   ISSN 0028-0836                               
JRNL        PMID   24499919                                                     
JRNL        DOI    10.1038/NATURE12950                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    6.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   SOFTWARE PACKAGES      : MAPPOS, COOT, MDFF, UCSF CHIMERA,         
REMARK   3                            SIGNATURE, SPIDER                         
REMARK   3   RECONSTRUCTION SCHEMA  : NULL                                      
REMARK   3                                                                      
REMARK   3 EM MAP-MODEL FITTING AND REFINEMENT                                  
REMARK   3   PDB ENTRY                    : NULL                                
REMARK   3   REFINEMENT SPACE             : NULL                                
REMARK   3   REFINEMENT PROTOCOL          : NULL                                
REMARK   3   REFINEMENT TARGET            : NULL                                
REMARK   3   OVERALL ANISOTROPIC B VALUE  : NULL                                
REMARK   3                                                                      
REMARK   3 FITTING PROCEDURE : NULL                                             
REMARK   3                                                                      
REMARK   3 EM IMAGE RECONSTRUCTION STATISTICS                                   
REMARK   3   NOMINAL PIXEL SIZE (ANGSTROMS)    : 1.238                          
REMARK   3   ACTUAL PIXEL SIZE  (ANGSTROMS)    : NULL                           
REMARK   3   EFFECTIVE RESOLUTION (ANGSTROMS)  : 6.900                          
REMARK   3   NUMBER OF PARTICLES               : 162655                         
REMARK   3   CTF CORRECTION METHOD             : NULL                           
REMARK   3                                                                      
REMARK   3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL                    
REMARK   3                                                                      
REMARK   3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD   
REMARK   3  -2510. (DEPOSITION ID: 12120).                                      
REMARK   4                                                                      
REMARK   4 4CG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE.                               
REMARK 100 THE DEPOSITION ID IS D_1290059036.                                   
REMARK 245                                                                      
REMARK 245 EXPERIMENTAL DETAILS                                                 
REMARK 245   RECONSTRUCTION METHOD          : SINGLE PARTICLE                   
REMARK 245   SPECIMEN TYPE                  : NULL                              
REMARK 245                                                                      
REMARK 245 ELECTRON MICROSCOPE SAMPLE                                           
REMARK 245   SAMPLE TYPE                    : PARTICLE                          
REMARK 245   PARTICLE TYPE                  : POINT                             
REMARK 245   NAME OF SAMPLE                 : IDLE SEC61 BOUND TO AN EMPTY      
REMARK 245                                    WHEAT GERM 80S-RIBOSOME           
REMARK 245   SAMPLE CONCENTRATION (MG ML-1) : NULL                              
REMARK 245   SAMPLE SUPPORT DETAILS         : CARBON                            
REMARK 245   SAMPLE VITRIFICATION DETAILS   : VITRIFICATION 1 -- CRYOGEN-       
REMARK 245                                    ETHANE, HUMIDITY- 95,             
REMARK 245                                    INSTRUMENT- FEI VITROBOT MARK     
REMARK 245                                    IV, METHOD- BLOT FOR 3 SECONDS    
REMARK 245                                    BEFORE PLUNGING,                  
REMARK 245   SAMPLE BUFFER                  : 30 MM HEPES/KOH 7.6, 10 MM        
REMARK 245                                    MG(OAC)2, 180 MM KOAC/HAC PH      
REMARK 245                                    7.6, 0.3 % DIGITONIN, 1 MM DTT    
REMARK 245   PH                             : 7.60                              
REMARK 245   SAMPLE DETAILS                 : NULL                              
REMARK 245                                                                      
REMARK 245 DATA ACQUISITION                                                     
REMARK 245   DATE OF EXPERIMENT                : 17-JUL-11                      
REMARK 245   NUMBER OF MICROGRAPHS-IMAGES      : NULL                           
REMARK 245   TEMPERATURE (KELVIN)              : NULL                           
REMARK 245   MICROSCOPE MODEL                  : FEI TITAN KRIOS                
REMARK 245   DETECTOR TYPE                     : TVIPS TEMCAM-F416 (4K X 4K)    
REMARK 245   MINIMUM DEFOCUS (NM)              : 1300.00                        
REMARK 245   MAXIMUM DEFOCUS (NM)              : 4000.00                        
REMARK 245   MINIMUM TILT ANGLE (DEGREES)      : NULL                           
REMARK 245   MAXIMUM TILT ANGLE (DEGREES)      : NULL                           
REMARK 245   NOMINAL CS                        : 2.70                           
REMARK 245   IMAGING MODE                      : BRIGHT FIELD                   
REMARK 245   ELECTRON DOSE (ELECTRONS NM**-2)  : 25.00                          
REMARK 245   ILLUMINATION MODE                 : FLOOD BEAM                     
REMARK 245   NOMINAL MAGNIFICATION             : NULL                           
REMARK 245   CALIBRATED MAGNIFICATION          : 148721                         
REMARK 245   SOURCE                            : FIELD EMISSION GUN             
REMARK 245   ACCELERATION VOLTAGE (KV)         : 200                            
REMARK 245   IMAGING DETAILS                   : NULL                           
REMARK 247                                                                      
REMARK 247 ELECTRON MICROSCOPY                                                  
REMARK 247  THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON          
REMARK 247  MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE              
REMARK 247  THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES           
REMARK 247  ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION         
REMARK 247  OF THE STRUCTURE FACTORS.                                           
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ALA A     2                                                      
REMARK 465     ILE A     3                                                      
REMARK 465     LYS A     4                                                      
REMARK 465     PHE A     5                                                      
REMARK 465     LEU A     6                                                      
REMARK 465     GLU A     7                                                      
REMARK 465     VAL A     8                                                      
REMARK 465     ILE A     9                                                      
REMARK 465     LYS A    10                                                      
REMARK 465     PRO A    11                                                      
REMARK 465     PHE A    12                                                      
REMARK 465     CYS A    13                                                      
REMARK 465     VAL A    14                                                      
REMARK 465     ILE A    15                                                      
REMARK 465     LEU A    16                                                      
REMARK 465     PRO A    17                                                      
REMARK 465     GLU A    18                                                      
REMARK 465     ILE A    19                                                      
REMARK 465     GLN A    20                                                      
REMARK 465     LYS A    21                                                      
REMARK 465     PRO A    22                                                      
REMARK 465     GLU A    23                                                      
REMARK 465     ARG A    24                                                      
REMARK 465     MET B     1                                                      
REMARK 465     ASP B     2                                                      
REMARK 465     GLN B     3                                                      
REMARK 465     VAL B     4                                                      
REMARK 465     MET B     5                                                      
REMARK 465     GLN B     6                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   NE   ARG A   402     O    MET A   409              1.88            
REMARK 500   NH2  ARG A   402     O    MET A   409              1.93            
REMARK 500   CZ   ARG A   402     O    MET A   409              2.05            
REMARK 500   CB   ARG A   405     OG   SER A   408              2.08            
REMARK 500   O    VAL A   410     OD1  ASN A   414              2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    PHE A 476   C     PHE A 476   O      -0.230                       
REMARK 500    GLY B  68   C     GLY B  68   O      -0.232                       
REMARK 500    SER C  96   C     SER C  96   O      -0.229                       
REMARK 500    SER C  96   C     SER C  96   OXT    -0.229                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    GLN A  27   N   -  CA  -  CB  ANGL. DEV. =  11.1 DEGREES          
REMARK 500    PRO A  49   C   -  N   -  CA  ANGL. DEV. =   9.9 DEGREES          
REMARK 500    PRO A  49   C   -  N   -  CD  ANGL. DEV. = -27.1 DEGREES          
REMARK 500    PRO A  49   CA  -  N   -  CD  ANGL. DEV. = -17.6 DEGREES          
REMARK 500    SER A  55   N   -  CA  -  CB  ANGL. DEV. =   9.4 DEGREES          
REMARK 500    SER A  56   N   -  CA  -  CB  ANGL. DEV. =   9.9 DEGREES          
REMARK 500    SER A  71   N   -  CA  -  CB  ANGL. DEV. =  10.0 DEGREES          
REMARK 500    SER A 128   N   -  CA  -  CB  ANGL. DEV. =  10.0 DEGREES          
REMARK 500    TYR A 173   CB  -  CG  -  CD2 ANGL. DEV. =  -4.3 DEGREES          
REMARK 500    TYR A 173   CB  -  CG  -  CD1 ANGL. DEV. =   4.0 DEGREES          
REMARK 500    TYR A 257   CB  -  CG  -  CD2 ANGL. DEV. =  -4.5 DEGREES          
REMARK 500    TYR A 257   CB  -  CG  -  CD1 ANGL. DEV. =   4.0 DEGREES          
REMARK 500    TYR A 272   N   -  CA  -  CB  ANGL. DEV. =  10.8 DEGREES          
REMARK 500    TYR A 276   CB  -  CG  -  CD2 ANGL. DEV. =  -5.2 DEGREES          
REMARK 500    TYR A 276   CB  -  CG  -  CD1 ANGL. DEV. =   5.3 DEGREES          
REMARK 500    TYR A 336   CB  -  CG  -  CD2 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500    TYR A 364   CB  -  CG  -  CD2 ANGL. DEV. =  -4.1 DEGREES          
REMARK 500    TYR A 364   CB  -  CG  -  CD1 ANGL. DEV. =   4.0 DEGREES          
REMARK 500    PHE A 375   CB  -  CG  -  CD1 ANGL. DEV. =   4.2 DEGREES          
REMARK 500    ASN A 414   N   -  CA  -  CB  ANGL. DEV. =  10.8 DEGREES          
REMARK 500    GLY B  68   CA  -  C   -  O   ANGL. DEV. = -11.6 DEGREES          
REMARK 500    PHE C  80   CB  -  CG  -  CD1 ANGL. DEV. =   4.4 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLN A  27      124.90    148.00                                   
REMARK 500    PRO A  49      -19.64    100.47                                   
REMARK 500    PHE A  51      -24.11     94.25                                   
REMARK 500    MET A  54      -50.82    156.17                                   
REMARK 500    SER A  55      161.38    143.15                                   
REMARK 500    SER A  56     -147.44    115.78                                   
REMARK 500    ASP A  57       -6.74   -143.81                                   
REMARK 500    ALA A  59      169.05    155.48                                   
REMARK 500    PHE A  62     -158.75     13.92                                   
REMARK 500    ALA A  70       99.00     90.30                                   
REMARK 500    SER A  71     -144.64    115.74                                   
REMARK 500    ARG A  73      -19.41   -148.15                                   
REMARK 500    THR A  75     -124.16     58.06                                   
REMARK 500    ILE A  81       20.37    -57.92                                   
REMARK 500    VAL A 102        9.02     84.69                                   
REMARK 500    GLN A 127      -36.14   -137.06                                   
REMARK 500    GLU A 142        9.31     88.19                                   
REMARK 500    ALA A 145      153.24     94.77                                   
REMARK 500    ILE A 147      -66.15      7.08                                   
REMARK 500    LEU A 149      -59.79     14.64                                   
REMARK 500    LYS A 171       26.04   -155.73                                   
REMARK 500    TYR A 173      129.38    156.41                                   
REMARK 500    LEU A 175     -135.41    148.99                                   
REMARK 500    THR A 199     -144.58    166.03                                   
REMARK 500    VAL A 201      141.54   -172.84                                   
REMARK 500    PHE A 209     -136.10     53.64                                   
REMARK 500    ALA A 212      -96.94   -107.82                                   
REMARK 500    ILE A 213       52.29   -142.79                                   
REMARK 500    ILE A 214     -136.26    -14.80                                   
REMARK 500    THR A 222      -93.53    -21.00                                   
REMARK 500    THR A 224     -131.27     55.45                                   
REMARK 500    LYS A 226     -160.90     77.11                                   
REMARK 500    VAL A 227        3.04     86.86                                   
REMARK 500    ARG A 231     -170.24    168.23                                   
REMARK 500    TYR A 235      -45.35   -156.82                                   
REMARK 500    ARG A 236      -74.17    -52.31                                   
REMARK 500    GLN A 237      -67.80    -11.37                                   
REMARK 500    ASP A 264     -113.06    -97.51                                   
REMARK 500    LYS A 268        9.53     88.44                                   
REMARK 500    ALA A 270       15.65     94.26                                   
REMARK 500    ARG A 271      -35.96     87.35                                   
REMARK 500    TYR A 272      -83.42    151.95                                   
REMARK 500    ARG A 273      131.51    -20.82                                   
REMARK 500    LEU A 283     -122.42     48.97                                   
REMARK 500    ASN A 315       93.40   -177.58                                   
REMARK 500    LEU A 316     -137.72    -52.07                                   
REMARK 500    LEU A 317      139.92    -29.42                                   
REMARK 500    TRP A 324      -12.93     92.41                                   
REMARK 500    ALA A 335       62.75    -35.25                                   
REMARK 500    VAL A 338       72.44   -109.63                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      81 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 GLN A   47     ILE A   48                 -146.25                    
REMARK 500 ILE A   48     PRO A   49                 -134.08                    
REMARK 500 ALA A   59     ASP A   60                 -147.87                    
REMARK 500 TRP A   64     MET A   65                 -149.34                    
REMARK 500 ALA A   70     SER A   71                  146.24                    
REMARK 500 MET A  133     THR A  134                 -145.71                    
REMARK 500 GLY A  176     SER A  177                 -144.92                    
REMARK 500 PRO A  266     ILE A  267                 -134.62                    
REMARK 500 ARG A  273     GLY A  274                 -123.93                    
REMARK 500 ASP A  357     PRO A  358                 -105.12                    
REMARK 500 PRO A  358     VAL A  359                  142.76                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ARG A  73         0.15    SIDE CHAIN                              
REMARK 500    TYR A 285         0.07    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: EMD-2510   RELATED DB: EMDB                              
REMARK 900 CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME          
REMARK 900 RELATED ID: 4CG5   RELATED DB: PDB                                   
REMARK 900 CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE 80S RIBOSOME TRANSLATING   
REMARK 900 A SECRETORY SUBSTRATE                                                
REMARK 900 RELATED ID: 4CG6   RELATED DB: PDB                                   
REMARK 900 CRYO-EM OF THE SEC61-COMPLEX BOUND TO THE IDLE 80S RIBOSOME          
DBREF  4CG7 A    1   476  UNP    P38377   S61A1_CANFA      1    476             
DBREF  4CG7 B    1    68  UNP    P60058   SC61G_CANFA      1     68             
DBREF  4CG7 C   61    96  PDB    4CG7     4CG7            61     96             
SEQRES   1 A  476  MET ALA ILE LYS PHE LEU GLU VAL ILE LYS PRO PHE CYS          
SEQRES   2 A  476  VAL ILE LEU PRO GLU ILE GLN LYS PRO GLU ARG LYS ILE          
SEQRES   3 A  476  GLN PHE LYS GLU LYS VAL LEU TRP THR ALA ILE THR LEU          
SEQRES   4 A  476  PHE ILE PHE LEU VAL CYS CYS GLN ILE PRO LEU PHE GLY          
SEQRES   5 A  476  ILE MET SER SER ASP SER ALA ASP PRO PHE TYR TRP MET          
SEQRES   6 A  476  ARG VAL ILE LEU ALA SER ASN ARG GLY THR LEU MET GLU          
SEQRES   7 A  476  LEU GLY ILE SER PRO ILE VAL THR SER GLY LEU ILE MET          
SEQRES   8 A  476  GLN LEU LEU ALA GLY ALA LYS ILE ILE GLU VAL GLY ASP          
SEQRES   9 A  476  THR PRO LYS ASP ARG ALA LEU PHE ASN GLY ALA GLN LYS          
SEQRES  10 A  476  LEU PHE GLY MET ILE ILE THR ILE GLY GLN SER ILE VAL          
SEQRES  11 A  476  TYR VAL MET THR GLY MET TYR GLY ASP PRO SER GLU MET          
SEQRES  12 A  476  GLY ALA GLY ILE CYS LEU LEU ILE THR ILE GLN LEU PHE          
SEQRES  13 A  476  VAL ALA GLY LEU ILE VAL LEU LEU LEU ASP GLU LEU LEU          
SEQRES  14 A  476  GLN LYS GLY TYR GLY LEU GLY SER GLY ILE SER LEU PHE          
SEQRES  15 A  476  ILE ALA THR ASN ILE CYS GLU THR ILE VAL TRP LYS ALA          
SEQRES  16 A  476  PHE SER PRO THR THR VAL ASN THR GLY ARG GLY MET GLU          
SEQRES  17 A  476  PHE GLU GLY ALA ILE ILE ALA LEU PHE HIS LEU LEU ALA          
SEQRES  18 A  476  THR ARG THR ASP LYS VAL ARG ALA LEU ARG GLU ALA PHE          
SEQRES  19 A  476  TYR ARG GLN ASN LEU PRO ASN LEU MET ASN LEU ILE ALA          
SEQRES  20 A  476  THR ILE PHE VAL PHE ALA VAL VAL ILE TYR PHE GLN GLY          
SEQRES  21 A  476  PHE ARG VAL ASP LEU PRO ILE LYS SER ALA ARG TYR ARG          
SEQRES  22 A  476  GLY GLN TYR ASN THR TYR PRO ILE LYS LEU PHE TYR THR          
SEQRES  23 A  476  SER ASN ILE PRO ILE ILE LEU GLN SER ALA LEU VAL SER          
SEQRES  24 A  476  ASN LEU TYR VAL ILE SER GLN MET LEU SER ALA ARG PHE          
SEQRES  25 A  476  SER GLY ASN LEU LEU VAL SER LEU LEU GLY THR TRP SER          
SEQRES  26 A  476  ASP THR SER SER GLY GLY PRO ALA ARG ALA TYR PRO VAL          
SEQRES  27 A  476  GLY GLY LEU CYS HIS TYR LEU SER PRO PRO GLU SER PHE          
SEQRES  28 A  476  GLY SER VAL LEU GLU ASP PRO VAL HIS ALA VAL VAL TYR          
SEQRES  29 A  476  ILE VAL PHE MET LEU GLY SER CYS ALA PHE PHE SER LYS          
SEQRES  30 A  476  THR TRP ILE GLU VAL SER GLY SER SER ALA LYS ASP VAL          
SEQRES  31 A  476  ALA LYS GLN LEU LYS GLU GLN GLN MET VAL MET ARG GLY          
SEQRES  32 A  476  HIS ARG GLU THR SER MET VAL HIS GLU LEU ASN ARG TYR          
SEQRES  33 A  476  ILE PRO THR ALA ALA ALA PHE GLY GLY LEU CYS ILE GLY          
SEQRES  34 A  476  ALA LEU SER VAL LEU ALA ASP PHE LEU GLY ALA ILE GLY          
SEQRES  35 A  476  SER GLY THR GLY ILE LEU LEU ALA VAL THR ILE ILE TYR          
SEQRES  36 A  476  GLN TYR PHE GLU ILE PHE VAL LYS GLU GLN SER GLU VAL          
SEQRES  37 A  476  GLY SER MET GLY ALA LEU LEU PHE                              
SEQRES   1 B   68  MET ASP GLN VAL MET GLN PHE VAL GLU PRO SER ARG GLN          
SEQRES   2 B   68  PHE VAL LYS ASP SER ILE ARG LEU VAL LYS ARG CYS THR          
SEQRES   3 B   68  LYS PRO ASP ARG LYS GLU PHE GLN LYS ILE ALA MET ALA          
SEQRES   4 B   68  THR ALA ILE GLY PHE ALA ILE MET GLY PHE ILE GLY PHE          
SEQRES   5 B   68  PHE VAL LYS LEU ILE HIS ILE PRO ILE ASN ASN ILE ILE          
SEQRES   6 B   68  VAL GLY GLY                                                  
SEQRES   1 C   36  GLU ASP SER PRO GLY LEU LYS VAL GLY PRO VAL PRO VAL          
SEQRES   2 C   36  LEU VAL MET SER LEU LEU PHE ILE ALA SER VAL PHE MET          
SEQRES   3 C   36  LEU HIS ILE TRP GLY LYS TYR THR ARG SER                      
HELIX    1   1 GLN A   27  CYS A   46  1                                  20    
HELIX    2   2 TRP A   64  ALA A   70  1                                   7    
HELIX    3   3 SER A   82  LYS A   98  1                                  17    
HELIX    4   4 GLY A  103  GLN A  127  1                                  25    
HELIX    5   5 GLN A  127  GLY A  135  1                                   9    
HELIX    6   6 ALA A  145  CYS A  148  5                                   4    
HELIX    7   7 LEU A  149  GLN A  170  1                                  22    
HELIX    8   8 GLY A  178  PHE A  196  1                                  19    
HELIX    9   9 ALA A  215  ALA A  221  1                                   7    
HELIX   10  10 TYR A  235  GLN A  237  5                                   3    
HELIX   11  11 ASN A  238  PHE A  261  1                                  24    
HELIX   12  12 LYS A  282  SER A  313  1                                  32    
HELIX   13  13 LEU A  317  GLY A  322  1                                   6    
HELIX   14  14 GLY A  340  LEU A  345  1                                   6    
HELIX   15  15 VAL A  359  TRP A  379  1                                  21    
HELIX   16  16 SER A  386  GLN A  398  1                                  13    
HELIX   17  17 HIS A  411  ALA A  440  1                                  30    
HELIX   18  18 THR A  445  GLU A  464  1                                  20    
HELIX   19  19 PHE B    7  CYS B   25  1                                  19    
HELIX   20  20 ARG B   30  ILE B   59  1                                  30    
HELIX   21  21 PRO B   60  ASN B   62  5                                   3    
HELIX   22  22 VAL C   71  HIS C   88  1                                  18    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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