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Database: PDB
Entry: 4PD8
LinkDB: 4PD8
Original site: 4PD8 
HEADER    TRANSPORT PROTEIN                       17-APR-14   4PD8              
TITLE     STRUCTURE OF VCCNT-7C8C BOUND TO PYRROLO-CYTIDINE                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NUPC FAMILY PROTEIN;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1;                    
SOURCE   3 ORGANISM_TAXID: 243277;                                              
SOURCE   4 STRAIN: ATCC 39315 / EL TOR INABA N16961;                            
SOURCE   5 GENE: VC_2352;                                                       
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: C41 (DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET26                                     
KEYWDS    MEMBRANE PROTEIN, SODIUM-COUPLED TRANSPORTER, PYRROLO-CYTIDINE, DRUG  
KEYWDS   2 TRANSPORTER, TRANSPORT PROTEIN                                       
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Z.L.JOHNSON,S.-Y.LEE                                                  
REVDAT   5   27-SEP-23 4PD8    1       REMARK                                   
REVDAT   4   25-DEC-19 4PD8    1       REMARK                                   
REVDAT   3   20-SEP-17 4PD8    1       COMPND SOURCE REMARK                     
REVDAT   2   01-OCT-14 4PD8    1       JRNL                                     
REVDAT   1   13-AUG-14 4PD8    0                                                
JRNL        AUTH   Z.L.JOHNSON,J.H.LEE,K.LEE,M.LEE,D.Y.KWON,J.HONG,S.Y.LEE      
JRNL        TITL   STRUCTURAL BASIS OF NUCLEOSIDE AND NUCLEOSIDE DRUG           
JRNL        TITL 2 SELECTIVITY BY CONCENTRATIVE NUCLEOSIDE TRANSPORTERS.        
JRNL        REF    ELIFE                         V.   3 03604 2014              
JRNL        REFN                   ESSN 2050-084X                               
JRNL        PMID   25082345                                                     
JRNL        DOI    10.7554/ELIFE.03604                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.75 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX                                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 39.16                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.380                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 17698                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.204                           
REMARK   3   R VALUE            (WORKING SET) : 0.202                           
REMARK   3   FREE R VALUE                     : 0.247                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.060                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 896                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 39.1640 -  4.9940    1.00     2846   155  0.1959 0.2661        
REMARK   3     2  4.9940 -  3.9651    1.00     2809   147  0.1941 0.2344        
REMARK   3     3  3.9651 -  3.4642    1.00     2794   149  0.1890 0.2126        
REMARK   3     4  3.4642 -  3.1476    1.00     2792   149  0.2071 0.2221        
REMARK   3     5  3.1476 -  2.9221    1.00     2777   148  0.2310 0.2795        
REMARK   3     6  2.9221 -  2.7499    1.00     2784   148  0.2583 0.2877        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.340            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 64.07                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 60.97                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.003           3042                                  
REMARK   3   ANGLE     :  0.646           4130                                  
REMARK   3   CHIRALITY :  0.021            488                                  
REMARK   3   PLANARITY :  0.003            509                                  
REMARK   3   DIHEDRAL  : 10.575           1028                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4PD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000201080.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 22-AUG-11                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 24-ID-C                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97918                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : NULL                               
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 17711                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.750                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 5.800                              
REMARK 200  R MERGE                    (I) : 0.08300                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 9.7000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.80                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.65600                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: 3TIJ                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 69.88                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 37-42% PEG 400, 100 MM CACL2, PH 8.5,    
REMARK 280  LIQUID DIFFUSION, TEMPERATURE 290K                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+1/2                                            
REMARK 290       6555   X-Y,X,Z+1/2                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       41.53200            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       41.53200            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       41.53200            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM.                         
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 10360 ANGSTROM**2                         
REMARK 350 SURFACE AREA OF THE COMPLEX: 44420 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -0.500000 -0.866025  0.000000      119.63600            
REMARK 350   BIOMT2   2  0.866025 -0.500000  0.000000      207.21563            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   3 -0.500000  0.866025  0.000000     -119.63600            
REMARK 350   BIOMT2   3 -0.866025 -0.500000  0.000000      207.21563            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A    -5                                                      
REMARK 465     PRO A    -4                                                      
REMARK 465     ALA A    -3                                                      
REMARK 465     VAL A    -2                                                      
REMARK 465     PRO A    -1                                                      
REMARK 465     ARG A     0                                                      
REMARK 465     MET A     1                                                      
REMARK 465     ASN A   230                                                      
REMARK 465     GLU A   231                                                      
REMARK 465     ASP A   232                                                      
REMARK 465     ILE A   233                                                      
REMARK 465     THR A   234                                                      
REMARK 465     LEU A   235                                                      
REMARK 465     ASP A   236                                                      
REMARK 465     GLY A   237                                                      
REMARK 465     GLY A   238                                                      
REMARK 465     ASP A   239                                                      
REMARK 465     ASP A   240                                                      
REMARK 465     SER A   417                                                      
REMARK 465     PHE A   418                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LEU A   3    CG   CD1  CD2                                       
REMARK 470     LYS A  25    CG   CD   CE   NZ                                   
REMARK 470     LYS A 167    CD   CE   NZ                                        
REMARK 470     LYS A 226    CD   CE   NZ                                        
REMARK 470     GLN A 228    CG   CD   OE1  NE2                                  
REMARK 470     ASP A 229    CG   OD1  OD2                                       
REMARK 470     TRP A 314    CG   CD1  CD2  NE1  CE2  CE3  CZ2                   
REMARK 470     TRP A 314    CZ3  CH2                                            
REMARK 470     GLU A 345    CG   CD   OE1  OE2                                  
REMARK 470     LEU A 416    CG   CD1  CD2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A  23       98.97   -163.04                                   
REMARK 500    TYR A  48      -55.35   -122.19                                   
REMARK 500    ILE A 184     -144.41   -118.12                                   
REMARK 500    ALA A 330      -97.90   -139.03                                   
REMARK 500    ALA A 346       32.30    -94.67                                   
REMARK 500    ALA A 367       92.35    -67.49                                   
REMARK 500    ALA A 383       79.37   -153.84                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 502  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASN A 149   O                                                      
REMARK 620 2 ASN A 149   OD1 104.9                                              
REMARK 620 3 VAL A 152   O    82.1  98.2                                        
REMARK 620 4 SER A 183   OG   79.4  83.4 161.1                                  
REMARK 620 5 ILE A 184   O    89.2 164.4  76.8 106.1                            
REMARK 620 6 HOH A 601   O   160.6  92.1 105.1  93.6  75.2                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue P0C A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 503                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3TIJ   RELATED DB: PDB                                   
REMARK 900 3TIJ CONTAINS WILDTYPE VCCNT BOUND TO URIDINE                        
REMARK 900 RELATED ID: 4PB1   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4PD5   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4PD7   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4PB2   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4PD9   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4PDA   RELATED DB: PDB                                   
DBREF  4PD8 A    1   418  UNP    Q9KPL5   Q9KPL5_VIBCH     1    418             
SEQADV 4PD8 GLY A   -5  UNP  Q9KPL5              EXPRESSION TAG                 
SEQADV 4PD8 PRO A   -4  UNP  Q9KPL5              EXPRESSION TAG                 
SEQADV 4PD8 ALA A   -3  UNP  Q9KPL5              EXPRESSION TAG                 
SEQADV 4PD8 VAL A   -2  UNP  Q9KPL5              EXPRESSION TAG                 
SEQADV 4PD8 PRO A   -1  UNP  Q9KPL5              EXPRESSION TAG                 
SEQADV 4PD8 ARG A    0  UNP  Q9KPL5              EXPRESSION TAG                 
SEQADV 4PD8 CYS A    7  UNP  Q9KPL5    LEU     7 ENGINEERED MUTATION            
SEQADV 4PD8 CYS A    8  UNP  Q9KPL5    ILE     8 ENGINEERED MUTATION            
SEQRES   1 A  424  GLY PRO ALA VAL PRO ARG MET SER LEU PHE MET SER CYS          
SEQRES   2 A  424  CYS GLY MET ALA VAL LEU LEU GLY ILE ALA VAL LEU LEU          
SEQRES   3 A  424  SER SER ASN ARG LYS ALA ILE ASN LEU ARG THR VAL GLY          
SEQRES   4 A  424  GLY ALA PHE ALA ILE GLN PHE SER LEU GLY ALA PHE ILE          
SEQRES   5 A  424  LEU TYR VAL PRO TRP GLY GLN GLU LEU LEU ARG GLY PHE          
SEQRES   6 A  424  SER ASP ALA VAL SER ASN VAL ILE ASN TYR GLY ASN ASP          
SEQRES   7 A  424  GLY THR SER PHE LEU PHE GLY GLY LEU VAL SER GLY LYS          
SEQRES   8 A  424  MET PHE GLU VAL PHE GLY GLY GLY GLY PHE ILE PHE ALA          
SEQRES   9 A  424  PHE ARG VAL LEU PRO THR LEU ILE PHE PHE SER ALA LEU          
SEQRES  10 A  424  ILE SER VAL LEU TYR TYR LEU GLY VAL MET GLN TRP VAL          
SEQRES  11 A  424  ILE ARG ILE LEU GLY GLY GLY LEU GLN LYS ALA LEU GLY          
SEQRES  12 A  424  THR SER ARG ALA GLU SER MET SER ALA ALA ALA ASN ILE          
SEQRES  13 A  424  PHE VAL GLY GLN THR GLU ALA PRO LEU VAL VAL ARG PRO          
SEQRES  14 A  424  PHE VAL PRO LYS MET THR GLN SER GLU LEU PHE ALA VAL          
SEQRES  15 A  424  MET CYS GLY GLY LEU ALA SER ILE ALA GLY GLY VAL LEU          
SEQRES  16 A  424  ALA GLY TYR ALA SER MET GLY VAL LYS ILE GLU TYR LEU          
SEQRES  17 A  424  VAL ALA ALA SER PHE MET ALA ALA PRO GLY GLY LEU LEU          
SEQRES  18 A  424  PHE ALA LYS LEU MET MET PRO GLU THR GLU LYS PRO GLN          
SEQRES  19 A  424  ASP ASN GLU ASP ILE THR LEU ASP GLY GLY ASP ASP LYS          
SEQRES  20 A  424  PRO ALA ASN VAL ILE ASP ALA ALA ALA GLY GLY ALA SER          
SEQRES  21 A  424  ALA GLY LEU GLN LEU ALA LEU ASN VAL GLY ALA MET LEU          
SEQRES  22 A  424  ILE ALA PHE ILE GLY LEU ILE ALA LEU ILE ASN GLY MET          
SEQRES  23 A  424  LEU GLY GLY ILE GLY GLY TRP PHE GLY MET PRO GLU LEU          
SEQRES  24 A  424  LYS LEU GLU MET LEU LEU GLY TRP LEU PHE ALA PRO LEU          
SEQRES  25 A  424  ALA PHE LEU ILE GLY VAL PRO TRP ASN GLU ALA THR VAL          
SEQRES  26 A  424  ALA GLY GLU PHE ILE GLY LEU LYS THR VAL ALA ASN GLU          
SEQRES  27 A  424  PHE VAL ALA TYR SER GLN PHE ALA PRO TYR LEU THR GLU          
SEQRES  28 A  424  ALA ALA PRO VAL VAL LEU SER GLU LYS THR LYS ALA ILE          
SEQRES  29 A  424  ILE SER PHE ALA LEU CYS GLY PHE ALA ASN LEU SER SER          
SEQRES  30 A  424  ILE ALA ILE LEU LEU GLY GLY LEU GLY SER LEU ALA PRO          
SEQRES  31 A  424  LYS ARG ARG GLY ASP ILE ALA ARG MET GLY VAL LYS ALA          
SEQRES  32 A  424  VAL ILE ALA GLY THR LEU SER ASN LEU MET ALA ALA THR          
SEQRES  33 A  424  ILE ALA GLY PHE PHE LEU SER PHE                              
HET    P0C  A 501      20                                                       
HET     NA  A 502       1                                                       
HET    DMU  A 503      33                                                       
HETNAM     P0C 6-METHYL-3-(BETA-D-RIBOFURANOSYL)-3,7-DIHYDRO-2H-                
HETNAM   2 P0C  PYRROLO[2,3-D]PYRIMIDIN-2-ONE                                   
HETNAM      NA SODIUM ION                                                       
HETNAM     DMU DECYL-BETA-D-MALTOPYRANOSIDE                                     
HETSYN     P0C 6-METHYL-3-(BETA-D-2-RIBOFURANOSYL)PYRROLO[2,3-D]                
HETSYN   2 P0C  PYRIMIDIN-2-ONE                                                 
HETSYN     DMU DECYLMALTOSIDE                                                   
FORMUL   2  P0C    C12 H15 N3 O5                                                
FORMUL   3   NA    NA 1+                                                        
FORMUL   4  DMU    C22 H42 O11                                                  
FORMUL   5  HOH   *3(H2 O)                                                      
HELIX    1 AA1 LEU A    3  LEU A   20  1                                  18    
HELIX    2 AA2 ASN A   23  ILE A   27  5                                   5    
HELIX    3 AA3 ASN A   28  TYR A   48  1                                  21    
HELIX    4 AA4 VAL A   49  GLY A   79  1                                  31    
HELIX    5 AA5 GLY A   80  SER A   83  5                                   4    
HELIX    6 AA6 GLY A   84  GLY A   91  1                                   8    
HELIX    7 AA7 GLY A   92  PHE A   95  5                                   4    
HELIX    8 AA8 ILE A   96  VAL A  101  1                                   6    
HELIX    9 AA9 VAL A  101  LEU A  118  1                                  18    
HELIX   10 AB1 GLY A  119  GLY A  137  1                                  19    
HELIX   11 AB2 SER A  139  ASN A  149  1                                  11    
HELIX   12 AB3 GLU A  156  VAL A  165  5                                  10    
HELIX   13 AB4 THR A  169  ALA A  182  1                                  14    
HELIX   14 AB5 ALA A  185  SER A  194  1                                  10    
HELIX   15 AB6 LYS A  198  MET A  208  1                                  11    
HELIX   16 AB7 MET A  208  MET A  221  1                                  14    
HELIX   17 AB8 ASN A  244  TRP A  287  1                                  44    
HELIX   18 AB9 LYS A  294  ILE A  310  1                                  17    
HELIX   19 AC1 PRO A  313  ASN A  315  5                                   3    
HELIX   20 AC2 GLU A  316  ALA A  330  1                                  15    
HELIX   21 AC3 ASN A  331  ALA A  340  1                                  10    
HELIX   22 AC4 PRO A  341  THR A  344  5                                   4    
HELIX   23 AC5 SER A  352  CYS A  364  1                                  13    
HELIX   24 AC6 LEU A  369  ALA A  383  1                                  15    
HELIX   25 AC7 ARG A  386  PHE A  415  1                                  30    
LINK         O   ASN A 149                NA    NA A 502     1555   1555  2.50  
LINK         OD1 ASN A 149                NA    NA A 502     1555   1555  2.50  
LINK         O   VAL A 152                NA    NA A 502     1555   1555  2.44  
LINK         OG  SER A 183                NA    NA A 502     1555   1555  2.41  
LINK         O   ILE A 184                NA    NA A 502     1555   1555  2.34  
LINK        NA    NA A 502                 O   HOH A 601     1555   1555  2.40  
SITE     1 AC1 13 GLN A 154  ALA A 185  VAL A 188  TYR A 192                    
SITE     2 AC1 13 LEU A 259  GLU A 332  PHE A 333  PHE A 366                    
SITE     3 AC1 13 ASN A 368  SER A 371  ILE A 374  HOH A 602                    
SITE     4 AC1 13 HOH A 603                                                     
SITE     1 AC2  5 ASN A 149  VAL A 152  SER A 183  ILE A 184                    
SITE     2 AC2  5 HOH A 601                                                     
SITE     1 AC3  4 ALA A 243  ASN A 244  ILE A 372  ALA A 391                    
CRYST1  119.636  119.636   83.064  90.00  90.00 120.00 P 63          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008359  0.004826  0.000000        0.00000                         
SCALE2      0.000000  0.009652  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012039        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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