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Database: PDB
Entry: 4RD1
LinkDB: 4RD1
Original site: 4RD1 
HEADER    TRANSLATION                             18-SEP-14   4RD1              
TITLE     STRUCTURE OF AIF2-GAMMA H97A VARIANT FROM SULFOLOBUS SOLFATARICUS     
TITLE    2 BOUND TO GTP                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA;             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: AIF2-GAMMA SUBUNIT;                                        
COMPND   5 SYNONYM: AIF2-GAMMA, EIF-2-GAMMA;                                    
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS;                        
SOURCE   3 ORGANISM_TAXID: 273057;                                              
SOURCE   4 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2;                      
SOURCE   5 GENE: EIF2G, SSO0412, SULFOLOBUS SOLFATARICUS;                       
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA;                              
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET3A                                     
KEYWDS    ROSSMANN-FOLD, TRANSLATION                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    E.DUBIEZ,A.ALEKSANDROV,C.LAZENNEC-SCHURDEVIN,Y.MECHULAM,E.SCHMITT     
REVDAT   4   20-SEP-23 4RD1    1       REMARK SEQADV LINK                       
REVDAT   3   22-NOV-17 4RD1    1       REMARK                                   
REVDAT   2   29-JUL-15 4RD1    1       TITLE                                    
REVDAT   1   27-MAY-15 4RD1    0                                                
JRNL        AUTH   E.DUBIEZ,A.ALEKSANDROV,C.LAZENNEC-SCHURDEVIN,Y.MECHULAM,     
JRNL        AUTH 2 E.SCHMITT                                                    
JRNL        TITL   IDENTIFICATION OF A SECOND GTP-BOUND MAGNESIUM ION IN        
JRNL        TITL 2 ARCHAEAL INITIATION FACTOR 2.                                
JRNL        REF    NUCLEIC ACIDS RES.            V.  43  2946 2015              
JRNL        REFN                   ISSN 0305-1048                               
JRNL        PMID   25690901                                                     
JRNL        DOI    10.1093/NAR/GKV053                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.8.4_1496)                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 44.11                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.360                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 65988                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.161                           
REMARK   3   R VALUE            (WORKING SET) : 0.160                           
REMARK   3   FREE R VALUE                     : 0.189                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.070                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3348                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 44.1311 -  4.3241    1.00     2813   178  0.1598 0.1914        
REMARK   3     2  4.3241 -  3.4325    1.00     2708   147  0.1442 0.1569        
REMARK   3     3  3.4325 -  2.9988    1.00     2669   147  0.1559 0.1664        
REMARK   3     4  2.9988 -  2.7246    1.00     2635   126  0.1674 0.1811        
REMARK   3     5  2.7246 -  2.5294    1.00     2638   149  0.1678 0.2093        
REMARK   3     6  2.5294 -  2.3802    1.00     2638   155  0.1666 0.2014        
REMARK   3     7  2.3802 -  2.2610    1.00     2618   136  0.1598 0.1934        
REMARK   3     8  2.2610 -  2.1626    1.00     2627   133  0.1563 0.1708        
REMARK   3     9  2.1626 -  2.0794    1.00     2634   130  0.1507 0.1780        
REMARK   3    10  2.0794 -  2.0076    1.00     2573   140  0.1587 0.1770        
REMARK   3    11  2.0076 -  1.9448    1.00     2604   139  0.1551 0.1973        
REMARK   3    12  1.9448 -  1.8892    1.00     2620   142  0.1492 0.2079        
REMARK   3    13  1.8892 -  1.8395    1.00     2593   125  0.1537 0.2185        
REMARK   3    14  1.8395 -  1.7946    1.00     2589   159  0.1590 0.2062        
REMARK   3    15  1.7946 -  1.7538    1.00     2607   134  0.1564 0.2076        
REMARK   3    16  1.7538 -  1.7165    1.00     2603   108  0.1527 0.2015        
REMARK   3    17  1.7165 -  1.6822    1.00     2604   122  0.1616 0.1845        
REMARK   3    18  1.6822 -  1.6504    1.00     2535   166  0.1763 0.2269        
REMARK   3    19  1.6504 -  1.6209    1.00     2641   128  0.1944 0.2810        
REMARK   3    20  1.6209 -  1.5935    1.00     2548   134  0.2004 0.2602        
REMARK   3    21  1.5935 -  1.5678    1.00     2609   146  0.1845 0.2466        
REMARK   3    22  1.5678 -  1.5436    1.00     2552   138  0.1919 0.2631        
REMARK   3    23  1.5436 -  1.5209    1.00     2599   133  0.1943 0.2538        
REMARK   3    24  1.5209 -  1.4995    0.94     2383   133  0.1988 0.2387        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.160            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.750           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.006           3479                                  
REMARK   3   ANGLE     :  1.124           4749                                  
REMARK   3   CHIRALITY :  0.071            547                                  
REMARK   3   PLANARITY :  0.005            587                                  
REMARK   3   DIHEDRAL  : 17.711           1334                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4RD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000087193.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 04-DEC-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SOLEIL                             
REMARK 200  BEAMLINE                       : PROXIMA 1                          
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.979180                           
REMARK 200  MONOCHROMATOR                  : CRYSTAL                            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : PSI PILATUS 6M                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 65993                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 46.400                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 6.420                              
REMARK 200  R MERGE                    (I) : 0.13600                            
REMARK 200  R SYM                      (I) : 0.13600                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.6600                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.59                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 7.15                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.53300                            
REMARK 200  R SYM FOR SHELL            (I) : 0.53300                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.250                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS            
REMARK 200 SOFTWARE USED: PHENIX 1.8.4_1496                                     
REMARK 200 STARTING MODEL: 4RCZ                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.43                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 70% MPD, PH 7.5, VAPOR DIFFUSION,        
REMARK 280  HANGING DROP, TEMPERATURE 277K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       23.16000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       72.30000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       30.30500            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       72.30000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       23.16000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       30.30500            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 250        0.45     81.07                                   
REMARK 500    LYS A 354       -3.05     81.36                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 504  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  19   OD1                                                    
REMARK 620 2 GLY A  44   O   161.9                                              
REMARK 620 3 HOH A 648   O    81.1  83.6                                        
REMARK 620 4 HOH A 699   O    93.8  77.4  93.5                                  
REMARK 620 5 HOH A 887   O    84.3 106.2  93.2 172.7                            
REMARK 620 6 HOH A 888   O    88.4 106.5 169.5  86.2  86.7                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 503  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A  23   OG1                                                    
REMARK 620 2 THR A  46   OG1  88.5                                              
REMARK 620 3 GTP A 501   O2G 171.9  97.0                                        
REMARK 620 4 GTP A 501   O2B  88.2 172.9  87.0                                  
REMARK 620 5 GDP A 502   O3B  95.2 172.8  80.0   7.0                            
REMARK 620 6 PO4 A 505   O3  178.0  91.5   6.8  92.0  85.0                      
REMARK 620 7 HOH A 606   O    89.2  91.6  84.6  94.6  94.6  88.8                
REMARK 620 8 HOH A 611   O    88.6  86.8  97.7  86.9  87.1  93.4 177.3          
REMARK 620 N                    1     2     3     4     5     6     7           
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 502                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 504                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 505                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 506                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 507                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 508                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4RCY   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4RCZ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4RD0   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4RD2   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4RD3   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4RD4   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4RD6   RELATED DB: PDB                                   
DBREF  4RD1 A    1   415  UNP    Q980A5   IF2G_SULSO       1    415             
SEQADV 4RD1 ALA A   97  UNP  Q980A5    HIS    97 ENGINEERED MUTATION            
SEQRES   1 A  415  MET ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY          
SEQRES   2 A  415  VAL VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL          
SEQRES   3 A  415  GLN ALA ILE THR GLY ILE TRP THR SER LYS HIS SER GLU          
SEQRES   4 A  415  GLU LEU LYS ARG GLY MET THR ILE LYS LEU GLY TYR ALA          
SEQRES   5 A  415  GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS PRO          
SEQRES   6 A  415  GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS GLY          
SEQRES   7 A  415  SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER PHE          
SEQRES   8 A  415  ILE ASP ALA PRO GLY ALA GLU VAL LEU MET ALA THR MET          
SEQRES   9 A  415  LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU VAL          
SEQRES  10 A  415  VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR ARG          
SEQRES  11 A  415  GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS ASN          
SEQRES  12 A  415  LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER LYS          
SEQRES  13 A  415  GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN PHE          
SEQRES  14 A  415  THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE PRO          
SEQRES  15 A  415  VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU ILE          
SEQRES  16 A  415  GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG ASP          
SEQRES  17 A  415  LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER PHE          
SEQRES  18 A  415  ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU LYS          
SEQRES  19 A  415  GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU PHE          
SEQRES  20 A  415  LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU ARG          
SEQRES  21 A  415  VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE PHE          
SEQRES  22 A  415  THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU PHE          
SEQRES  23 A  415  LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY THR          
SEQRES  24 A  415  TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU LEU          
SEQRES  25 A  415  GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO VAL          
SEQRES  26 A  415  LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU ARG          
SEQRES  27 A  415  VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO ILE          
SEQRES  28 A  415  ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SER          
SEQRES  29 A  415  THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP GLU          
SEQRES  30 A  415  ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SER          
SEQRES  31 A  415  ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA GLY          
SEQRES  32 A  415  ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE              
HET    GTP  A 501      32                                                       
HET    GDP  A 502      28                                                       
HET     MG  A 503       1                                                       
HET     MG  A 504       1                                                       
HET    PO4  A 505       5                                                       
HET    GDP  A 506      28                                                       
HET    MPD  A 507       8                                                       
HET    MPD  A 508       8                                                       
HETNAM     GTP GUANOSINE-5'-TRIPHOSPHATE                                        
HETNAM     GDP GUANOSINE-5'-DIPHOSPHATE                                         
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     PO4 PHOSPHATE ION                                                    
HETNAM     MPD (4S)-2-METHYL-2,4-PENTANEDIOL                                    
FORMUL   2  GTP    C10 H16 N5 O14 P3                                            
FORMUL   3  GDP    2(C10 H15 N5 O11 P2)                                         
FORMUL   4   MG    2(MG 2+)                                                     
FORMUL   6  PO4    O4 P 3-                                                      
FORMUL   8  MPD    2(C6 H14 O2)                                                 
FORMUL  10  HOH   *317(H2 O)                                                    
HELIX    1   1 GLY A   21  GLY A   31  1                                  11    
HELIX    2   2 HIS A   37  GLY A   44  1                                   8    
HELIX    3   3 CYS A   74  GLY A   78  5                                   5    
HELIX    4   4 ALA A   97  VAL A   99  5                                   3    
HELIX    5   5 LEU A  100  ALA A  109  1                                  10    
HELIX    6   6 GLN A  126  GLY A  140  1                                  15    
HELIX    7   7 LYS A  150  VAL A  154  5                                   5    
HELIX    8   8 SER A  155  LYS A  171  1                                  17    
HELIX    9   9 ASN A  190  ILE A  202  1                                  13    
HELIX   10  10 GLN A  229  LEU A  233  5                                   5    
HELIX   11  11 THR A  306  ASN A  310  5                                   5    
SHEET    1   A 7 TYR A  68  VAL A  69  0                                        
SHEET    2   A 7 GLY A  50  VAL A  58 -1  N  GLY A  57   O  VAL A  69           
SHEET    3   A 7 LYS A  84  ASP A  93 -1  O  ILE A  89   N  THR A  54           
SHEET    4   A 7 ASN A  11  VAL A  15  1  N  ILE A  12   O  SER A  90           
SHEET    5   A 7 GLY A 113  ALA A 119  1  O  GLY A 113   N  GLY A  13           
SHEET    6   A 7 LEU A 144  ASN A 149  1  O  VAL A 147   N  VAL A 118           
SHEET    7   A 7 ILE A 180  PRO A 182  1  O  ILE A 181   N  ILE A 146           
SHEET    1   B 8 LYS A 266  LYS A 275  0                                        
SHEET    2   B 8 GLU A 252  LYS A 263 -1  N  VAL A 261   O  SER A 268           
SHEET    3   B 8 ILE A 315  LEU A 318 -1  O  ILE A 315   N  LEU A 256           
SHEET    4   B 8 VAL A 214  PHE A 221 -1  N  MET A 215   O  ILE A 316           
SHEET    5   B 8 VAL A 237  GLN A 244 -1  O  SER A 241   N  LEU A 216           
SHEET    6   B 8 VAL A 295  GLY A 298 -1  O  ILE A 297   N  ILE A 238           
SHEET    7   B 8 SER A 278  PHE A 281 -1  N  ARG A 280   O  ALA A 296           
SHEET    8   B 8 GLU A 284  PHE A 286 -1  O  PHE A 286   N  ILE A 279           
SHEET    1   C 2 PHE A 247  LYS A 248  0                                        
SHEET    2   C 2 GLU A 288  ALA A 289 -1  O  ALA A 289   N  PHE A 247           
SHEET    1   D 7 VAL A 325  LEU A 335  0                                        
SHEET    2   D 7 GLU A 377  ALA A 387 -1  O  LEU A 382   N  TRP A 327           
SHEET    3   D 7 SER A 364  VAL A 373 -1  N  ILE A 369   O  GLU A 381           
SHEET    4   D 7 THR A 356  VAL A 361 -1  N  LEU A 359   O  THR A 366           
SHEET    5   D 7 ILE A 393  ILE A 401 -1  O  SER A 398   N  MET A 358           
SHEET    6   D 7 ARG A 404  GLU A 414 -1  O  ILE A 408   N  ILE A 397           
SHEET    7   D 7 VAL A 325  LEU A 335 -1  N  ARG A 330   O  GLU A 414           
SSBOND   1 CYS A   59    CYS A   74                          1555   1555  2.04  
SSBOND   2 CYS A   62    CYS A   77                          1555   1555  2.04  
LINK         OD1 ASP A  19                MG    MG A 504     1555   1555  2.12  
LINK         OG1 THR A  23                MG    MG A 503     1555   1555  2.10  
LINK         O   GLY A  44                MG    MG A 504     1555   1555  2.09  
LINK         OG1 THR A  46                MG    MG A 503     1555   1555  2.08  
LINK         O2GAGTP A 501                MG    MG A 503     1555   1555  1.86  
LINK         O2BAGTP A 501                MG    MG A 503     1555   1555  2.20  
LINK         O3BBGDP A 502                MG    MG A 503     1555   1555  2.09  
LINK        MG    MG A 503                 O3 BPO4 A 505     1555   1555  2.33  
LINK        MG    MG A 503                 O   HOH A 606     1555   1555  2.03  
LINK        MG    MG A 503                 O   HOH A 611     1555   1555  2.11  
LINK        MG    MG A 504                 O   HOH A 648     1555   1555  1.98  
LINK        MG    MG A 504                 O   HOH A 699     1555   1555  2.37  
LINK        MG    MG A 504                 O   HOH A 887     1555   1555  2.26  
LINK        MG    MG A 504                 O   HOH A 888     1555   1555  2.09  
CISPEP   1 LYS A   64    PRO A   65          0         6.64                     
CISPEP   2 PHE A  124    PRO A  125          0        -4.30                     
CISPEP   3 LEU A  256    PRO A  257          0         0.56                     
SITE     1 AC1 29 VAL A  18  ASP A  19  HIS A  20  GLY A  21                    
SITE     2 AC1 29 LYS A  22  THR A  23  THR A  24  MET A  45                    
SITE     3 AC1 29 THR A  46  GLY A  96  ASN A 149  LYS A 150                    
SITE     4 AC1 29 ASP A 152  VAL A 153  SER A 184  ALA A 185                    
SITE     5 AC1 29 LEU A 186   MG A 503  HOH A 601  HOH A 606                    
SITE     6 AC1 29 HOH A 611  HOH A 648  HOH A 649  HOH A 655                    
SITE     7 AC1 29 HOH A 679  HOH A 798  HOH A 816  HOH A 874                    
SITE     8 AC1 29 HOH A 887                                                     
SITE     1 AC2 22 ASP A  19  HIS A  20  GLY A  21  LYS A  22                    
SITE     2 AC2 22 THR A  23  THR A  24  ASN A 149  LYS A 150                    
SITE     3 AC2 22 ASP A 152  VAL A 153  SER A 184  ALA A 185                    
SITE     4 AC2 22 LEU A 186   MG A 503  HOH A 606  HOH A 611                    
SITE     5 AC2 22 HOH A 648  HOH A 649  HOH A 679  HOH A 798                    
SITE     6 AC2 22 HOH A 816  HOH A 874                                          
SITE     1 AC3  7 THR A  23  THR A  46  GTP A 501  GDP A 502                    
SITE     2 AC3  7 PO4 A 505  HOH A 606  HOH A 611                               
SITE     1 AC4  6 ASP A  19  GLY A  44  HOH A 648  HOH A 699                    
SITE     2 AC4  6 HOH A 887  HOH A 888                                          
SITE     1 AC5 12 VAL A  18  LYS A  22  MET A  45  THR A  46                    
SITE     2 AC5 12 PRO A  95  GLY A  96  GDP A 502   MG A 503                    
SITE     3 AC5 12 HOH A 601  HOH A 606  HOH A 648  HOH A 887                    
SITE     1 AC6 12 VAL A 223  LYS A 225  LYS A 234  SER A 278                    
SITE     2 AC6 12 ARG A 280  GLY A 282  ALA A 296  GLY A 298                    
SITE     3 AC6 12 HOH A 702  HOH A 757  HOH A 869  HOH A 915                    
SITE     1 AC7  5 GLU A  39  LYS A  42  ARG A  43  LYS A 287                    
SITE     2 AC7  5 HOH A 631                                                     
SITE     1 AC8  2 ALA A   2  TYR A 300                                          
CRYST1   46.320   60.610  144.600  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.021589  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.016499  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006916        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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