GenomeNet

Database: PDB
Entry: 5GVE
LinkDB: 5GVE
Original site: 5GVE 
HEADER    ISOMERASE/PROTEIN BINDING               05-SEP-16   5GVE              
TITLE     HUMAN TOP3B-TDRD3 COMPLEX                                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA TOPOISOMERASE 3-BETA-1;                                
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 1-612;                                        
COMPND   5 SYNONYM: DNA TOPOISOMERASE III BETA-1;                               
COMPND   6 EC: 5.99.1.2;                                                        
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 3;                         
COMPND  10 CHAIN: B;                                                            
COMPND  11 FRAGMENT: UNP RESIDUES 1-161;                                        
COMPND  12 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: TOP3B, TOP3B1;                                                 
SOURCE   6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 7108;                                       
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  10 ORGANISM_COMMON: HUMAN;                                              
SOURCE  11 ORGANISM_TAXID: 9606;                                                
SOURCE  12 GENE: TDRD3;                                                         
SOURCE  13 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  14 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    TOPOISOMERASE, SCAFFOLD, ISOMERASE-PROTEIN BINDING COMPLEX            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.GOTO-ITO,A.YAMAGATA,Y.SATO,T.S.TAKAHASHI,S.FUKAI                    
REVDAT   2   08-NOV-23 5GVE    1       REMARK                                   
REVDAT   1   14-JUN-17 5GVE    0                                                
JRNL        AUTH   S.GOTO-ITO,A.YAMAGATA,T.S.TAKAHASHI,Y.SATO,S.FUKAI           
JRNL        TITL   STRUCTURAL BASIS OF THE INTERACTION BETWEEN TOPOISOMERASE    
JRNL        TITL 2 III BETA AND THE TDRD3 AUXILIARY FACTOR                      
JRNL        REF    SCI REP                       V.   7 42123 2017              
JRNL        REFN                   ESSN 2045-2322                               
JRNL        PMID   28176834                                                     
JRNL        DOI    10.1038/SREP42123                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION.    3.61 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.9_1692                                      
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 3.61                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 47.00                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.410                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 22208                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.200                           
REMARK   3   R VALUE            (WORKING SET) : 0.198                           
REMARK   3   FREE R VALUE                     : 0.245                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.110                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1134                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 47.0012 -  7.2039    1.00     2703   132  0.1787 0.1982        
REMARK   3     2  7.2039 -  5.7212    1.00     2646   145  0.2200 0.2839        
REMARK   3     3  5.7212 -  4.9989    1.00     2624   152  0.1977 0.2913        
REMARK   3     4  4.9989 -  4.5423    1.00     2639   142  0.1760 0.2244        
REMARK   3     5  4.5423 -  4.2169    1.00     2609   137  0.1705 0.2093        
REMARK   3     6  4.2169 -  3.9684    1.00     2620   148  0.2104 0.2582        
REMARK   3     7  3.9684 -  3.7698    1.00     2608   143  0.2411 0.2876        
REMARK   3     8  3.7698 -  3.6057    1.00     2625   135  0.2719 0.3353        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.480            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.004           6208                                  
REMARK   3   ANGLE     :  1.135           8399                                  
REMARK   3   CHIRALITY :  0.079            938                                  
REMARK   3   PLANARITY :  0.004           1087                                  
REMARK   3   DIHEDRAL  : 13.516           2325                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: ALL                                                    
REMARK   3    ORIGIN FOR THE GROUP (A): -22.0221 -51.7221   0.4102              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   1.5584 T22:   1.0689                                     
REMARK   3      T33:   1.1073 T12:  -0.5168                                     
REMARK   3      T13:   0.1120 T23:  -0.0030                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.7770 L22:   1.4405                                     
REMARK   3      L33:   1.6832 L12:   0.9220                                     
REMARK   3      L13:   1.2205 L23:   1.6754                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.1472 S12:   0.3326 S13:  -0.0442                       
REMARK   3      S21:  -0.2489 S22:   0.2780 S23:  -0.0259                       
REMARK   3      S31:   0.3492 S32:  -0.0163 S33:  -0.1279                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5GVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-16.                  
REMARK 100 THE DEPOSITION ID IS D_1300001535.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 16-MAY-15                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.2                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL41XU                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CMOS                               
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS3 S 6M              
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 22224                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 3.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 9.000                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 11.2000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 3.66                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: 5GVC, 5GVD                                           
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 78.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.59                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA-CACODYLATE, 10 MM MGSO4, 1.7    
REMARK 280  M LI2SO4, PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+1/6                                            
REMARK 290       6555   X-Y,X,Z+5/6                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       74.54000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       37.27000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       55.90500            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       18.63500            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       93.17500            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 37820 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER A   209                                                      
REMARK 465     SER A   612                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OD2  ASP A   119     OH   TYR A   336              2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    PRO A  86   C   -  N   -  CA  ANGL. DEV. =   9.1 DEGREES          
REMARK 500    VAL B  79   CB  -  CA  -  C   ANGL. DEV. = -15.6 DEGREES          
REMARK 500    ALA B  80   CB  -  CA  -  C   ANGL. DEV. =  10.8 DEGREES          
REMARK 500    PRO B  92   C   -  N   -  CD  ANGL. DEV. =  12.8 DEGREES          
REMARK 500    PRO B  92   CB  -  CA  -  C   ANGL. DEV. = -13.6 DEGREES          
REMARK 500    PRO B  92   N   -  CA  -  C   ANGL. DEV. =  40.0 DEGREES          
REMARK 500    ARG B  93   C   -  N   -  CA  ANGL. DEV. =  27.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    VAL A 262      -59.53     64.39                                   
REMARK 500    TRP A 363       17.96   -140.89                                   
REMARK 500    GLU B  86     -120.38     64.23                                   
REMARK 500    ARG B  93      132.10    -36.17                                   
REMARK 500    MET B  94       24.89     81.39                                   
REMARK 500    HIS B 103      -46.99   -135.33                                   
REMARK 500    GLU B 110       86.15    -69.74                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 SER B   88     GLN B   89                 -148.78                    
REMARK 500 PRO B   92     ARG B   93                 -122.74                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5GVC   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5GVD   RELATED DB: PDB                                   
DBREF  5GVE A    1   612  UNP    O95985   TOP3B_HUMAN      1    612             
DBREF  5GVE B    1   161  UNP    Q9H7E2   TDRD3_HUMAN      1    161             
SEQADV 5GVE HIS A    0  UNP  O95985              EXPRESSION TAG                 
SEQADV 5GVE GLY B   -3  UNP  Q9H7E2              EXPRESSION TAG                 
SEQADV 5GVE PRO B   -2  UNP  Q9H7E2              EXPRESSION TAG                 
SEQADV 5GVE GLY B   -1  UNP  Q9H7E2              EXPRESSION TAG                 
SEQADV 5GVE HIS B    0  UNP  Q9H7E2              EXPRESSION TAG                 
SEQRES   1 A  613  HIS MET LYS THR VAL LEU MET VAL ALA GLU LYS PRO SER          
SEQRES   2 A  613  LEU ALA GLN SER ILE ALA LYS ILE LEU SER ARG GLY SER          
SEQRES   3 A  613  LEU SER SER HIS LYS GLY LEU ASN GLY ALA CYS SER VAL          
SEQRES   4 A  613  HIS GLU TYR THR GLY THR PHE ALA GLY GLN PRO VAL ARG          
SEQRES   5 A  613  PHE LYS MET THR SER VAL CYS GLY HIS VAL MET THR LEU          
SEQRES   6 A  613  ASP PHE LEU GLY LYS TYR ASN LYS TRP ASP LYS VAL ASP          
SEQRES   7 A  613  PRO ALA GLU LEU PHE SER GLN ALA PRO THR GLU LYS LYS          
SEQRES   8 A  613  GLU ALA ASN PRO LYS LEU ASN MET VAL LYS PHE LEU GLN          
SEQRES   9 A  613  VAL GLU GLY ARG GLY CYS ASP TYR ILE VAL LEU TRP LEU          
SEQRES  10 A  613  ASP CYS ASP LYS GLU GLY GLU ASN ILE CYS PHE GLU VAL          
SEQRES  11 A  613  LEU ASP ALA VAL LEU PRO VAL MET ASN LYS ALA HIS GLY          
SEQRES  12 A  613  GLY GLU LYS THR VAL PHE ARG ALA ARG PHE SER SER ILE          
SEQRES  13 A  613  THR ASP THR ASP ILE CYS ASN ALA MET ALA CYS LEU GLY          
SEQRES  14 A  613  GLU PRO ASP HIS ASN GLU ALA LEU SER VAL ASP ALA ARG          
SEQRES  15 A  613  GLN GLU LEU ASP LEU ARG ILE GLY CYS ALA PHE THR ARG          
SEQRES  16 A  613  PHE GLN THR LYS TYR PHE GLN GLY LYS TYR GLY ASP LEU          
SEQRES  17 A  613  ASP SER SER LEU ILE SER PHE GLY PRO CYS GLN THR PRO          
SEQRES  18 A  613  THR LEU GLY PHE CYS VAL GLU ARG HIS ASP LYS ILE GLN          
SEQRES  19 A  613  SER PHE LYS PRO GLU THR TYR TRP VAL LEU GLN ALA LYS          
SEQRES  20 A  613  VAL ASN THR ASP LYS ASP ARG SER LEU LEU LEU ASP TRP          
SEQRES  21 A  613  ASP ARG VAL ARG VAL PHE ASP ARG GLU ILE ALA GLN MET          
SEQRES  22 A  613  PHE LEU ASN MET THR LYS LEU GLU LYS GLU ALA GLN VAL          
SEQRES  23 A  613  GLU ALA THR SER ARG LYS GLU LYS ALA LYS GLN ARG PRO          
SEQRES  24 A  613  LEU ALA LEU ASN THR VAL GLU MET LEU ARG VAL ALA SER          
SEQRES  25 A  613  SER SER LEU GLY MET GLY PRO GLN HIS ALA MET GLN THR          
SEQRES  26 A  613  ALA GLU ARG LEU TYR THR GLN GLY TYR ILE SER TYR PRO          
SEQRES  27 A  613  ARG THR GLU THR THR HIS TYR PRO GLU ASN PHE ASP LEU          
SEQRES  28 A  613  LYS GLY SER LEU ARG GLN GLN ALA ASN HIS PRO TYR TRP          
SEQRES  29 A  613  ALA ASP THR VAL LYS ARG LEU LEU ALA GLU GLY ILE ASN          
SEQRES  30 A  613  ARG PRO ARG LYS GLY HIS ASP ALA GLY ASP HIS PRO PRO          
SEQRES  31 A  613  ILE THR PRO MET LYS SER ALA THR GLU ALA GLU LEU GLY          
SEQRES  32 A  613  GLY ASP ALA TRP ARG LEU TYR GLU TYR ILE THR ARG HIS          
SEQRES  33 A  613  PHE ILE ALA THR VAL SER HIS ASP CYS LYS TYR LEU GLN          
SEQRES  34 A  613  SER THR ILE SER PHE ARG ILE GLY PRO GLU LEU PHE THR          
SEQRES  35 A  613  CYS SER GLY LYS THR VAL LEU SER PRO GLY PHE THR GLU          
SEQRES  36 A  613  VAL MET PRO TRP GLN SER VAL PRO LEU GLU GLU SER LEU          
SEQRES  37 A  613  PRO THR CYS GLN ARG GLY ASP ALA PHE PRO VAL GLY GLU          
SEQRES  38 A  613  VAL LYS MET LEU GLU LYS GLN THR ASN PRO PRO ASP TYR          
SEQRES  39 A  613  LEU THR GLU ALA GLU LEU ILE THR LEU MET GLU LYS HIS          
SEQRES  40 A  613  GLY ILE GLY THR ASP ALA SER ILE PRO VAL HIS ILE ASN          
SEQRES  41 A  613  ASN ILE CYS GLN ARG ASN TYR VAL THR VAL GLU SER GLY          
SEQRES  42 A  613  ARG ARG LEU LYS PRO THR ASN LEU GLY ILE VAL LEU VAL          
SEQRES  43 A  613  HIS GLY TYR TYR LYS ILE ASP ALA GLU LEU VAL LEU PRO          
SEQRES  44 A  613  THR ILE ARG SER ALA VAL GLU LYS GLN LEU ASN LEU ILE          
SEQRES  45 A  613  ALA GLN GLY LYS ALA ASP TYR ARG GLN VAL LEU GLY HIS          
SEQRES  46 A  613  THR LEU ASP VAL PHE LYS ARG LYS PHE HIS TYR PHE VAL          
SEQRES  47 A  613  ASP SER ILE ALA GLY MET ASP GLU LEU MET GLU VAL SER          
SEQRES  48 A  613  PHE SER                                                      
SEQRES   1 B  165  GLY PRO GLY HIS MET ALA GLN VAL ALA GLY ALA ALA LEU          
SEQRES   2 B  165  SER GLN ALA GLY TRP TYR LEU SER ASP GLU GLY ILE GLU          
SEQRES   3 B  165  ALA CYS THR SER SER PRO ASP LYS VAL ASN VAL ASN ASP          
SEQRES   4 B  165  ILE ILE LEU ILE ALA LEU ASN THR ASP LEU ARG THR ILE          
SEQRES   5 B  165  GLY LYS LYS PHE LEU PRO SER ASP ILE ASN SER GLY LYS          
SEQRES   6 B  165  VAL GLU LYS LEU GLU GLY PRO CYS VAL LEU GLN ILE GLN          
SEQRES   7 B  165  LYS ILE ARG ASN VAL ALA ALA PRO LYS ASP ASN GLU GLU          
SEQRES   8 B  165  SER GLN ALA ALA PRO ARG MET LEU ARG LEU GLN MET THR          
SEQRES   9 B  165  ASP GLY HIS ILE SER CYS THR ALA VAL GLU PHE SER TYR          
SEQRES  10 B  165  MET SER LYS ILE SER LEU ASN THR PRO PRO GLY THR LYS          
SEQRES  11 B  165  VAL LYS LEU SER GLY ILE VAL ASP ILE LYS ASN GLY PHE          
SEQRES  12 B  165  LEU LEU LEU ASN ASP SER ASN THR THR VAL LEU GLY GLY          
SEQRES  13 B  165  GLU VAL GLU HIS LEU ILE GLU LYS TRP                          
HET     MG  A 701       1                                                       
HETNAM      MG MAGNESIUM ION                                                    
FORMUL   3   MG    MG 2+                                                        
HELIX    1 AA1 LYS A   10  SER A   22  1                                  13    
HELIX    2 AA2 GLY A   68  LYS A   72  5                                   5    
HELIX    3 AA3 ASP A   77  PHE A   82  5                                   6    
HELIX    4 AA4 ASN A   93  LEU A   96  5                                   4    
HELIX    5 AA5 ASN A   97  ARG A  107  1                                  11    
HELIX    6 AA6 ASP A  119  LEU A  134  1                                  16    
HELIX    7 AA7 PRO A  135  MET A  137  5                                   3    
HELIX    8 AA8 THR A  156  CYS A  166  1                                  11    
HELIX    9 AA9 ASP A  171  PHE A  200  1                                  30    
HELIX   10 AB1 CYS A  217  SER A  234  1                                  18    
HELIX   11 AB2 ASP A  266  MET A  276  1                                  11    
HELIX   12 AB3 ASN A  302  SER A  313  1                                  12    
HELIX   13 AB4 GLY A  317  GLN A  331  1                                  15    
HELIX   14 AB5 ASP A  349  GLN A  356  1                                   8    
HELIX   15 AB6 TRP A  363  GLY A  374  1                                  12    
HELIX   16 AB7 GLY A  402  VAL A  420  1                                  19    
HELIX   17 AB8 PRO A  450  VAL A  455  5                                   6    
HELIX   18 AB9 MET A  456  SER A  460  5                                   5    
HELIX   19 AC1 THR A  495  HIS A  506  1                                  12    
HELIX   20 AC2 SER A  513  ARG A  524  1                                  12    
HELIX   21 AC3 THR A  538  ASP A  552  1                                  15    
HELIX   22 AC4 ALA A  553  VAL A  556  5                                   4    
HELIX   23 AC5 LEU A  557  GLN A  573  1                                  17    
HELIX   24 AC6 ASP A  577  SER A  599  1                                  23    
HELIX   25 AC7 ILE A  600  PHE A  611  1                                  12    
HELIX   26 AC8 GLY B   -1  GLY B   13  1                                  15    
HELIX   27 AC9 SER B   17  CYS B   24  1                                   8    
HELIX   28 AD1 ASN B   32  ASN B   42  1                                  11    
HELIX   29 AD2 ASP B   44  GLY B   49  1                                   6    
SHEET    1 AA1 6 SER A  27  LYS A  30  0                                        
SHEET    2 AA1 6 SER A  37  THR A  44 -1  O  GLU A  40   N  SER A  27           
SHEET    3 AA1 6 PRO A  49  SER A  56 -1  O  PHE A  52   N  TYR A  41           
SHEET    4 AA1 6 LYS A   2  ALA A   8  1  N  VAL A   4   O  ARG A  51           
SHEET    5 AA1 6 TYR A 111  TRP A 115  1  O  TRP A 115   N  VAL A   7           
SHEET    6 AA1 6 VAL A 147  ARG A 149  1  O  PHE A 148   N  ILE A 112           
SHEET    1 AA2 2 MET A  62  PHE A  66  0                                        
SHEET    2 AA2 2 THR A  87  GLU A  91 -1  O  LYS A  90   N  THR A  63           
SHEET    1 AA3 7 SER A 254  LEU A 256  0                                        
SHEET    2 AA3 7 THR A 239  ASN A 248 -1  N  VAL A 247   O  LEU A 255           
SHEET    3 AA3 7 ALA A 475  GLN A 487 -1  O  GLY A 479   N  LYS A 246           
SHEET    4 AA3 7 GLU A 282  LYS A 295 -1  N  ALA A 283   O  PHE A 476           
SHEET    5 AA3 7 CYS A 424  ILE A 435 -1  O  SER A 432   N  GLU A 286           
SHEET    6 AA3 7 GLU A 438  SER A 449 -1  O  PHE A 440   N  PHE A 433           
SHEET    7 AA3 7 ASP A 258  TRP A 259 -1  N  ASP A 258   O  THR A 441           
SHEET    1 AA4 2 VAL A 527  GLU A 530  0                                        
SHEET    2 AA4 2 ARG A 534  PRO A 537 -1  O  ARG A 534   N  GLU A 530           
SHEET    1 AA5 8 LYS B  64  GLU B  66  0                                        
SHEET    2 AA5 8 ILE B 132  LYS B 136 -1  O  VAL B 133   N  LEU B  65           
SHEET    3 AA5 8 PHE B 139  LEU B 142 -1  O  LEU B 141   N  ASP B 134           
SHEET    4 AA5 8 SER B 105  GLU B 110  1  N  VAL B 109   O  LEU B 140           
SHEET    5 AA5 8 LEU B  95  THR B 100 -1  N  MET B  99   O  CYS B 106           
SHEET    6 AA5 8 CYS B  69  ASN B  78 -1  N  GLN B  74   O  GLN B  98           
SHEET    7 AA5 8 LYS B 126  LEU B 129 -1  O  VAL B 127   N  LEU B  71           
SHEET    8 AA5 8 THR B 147  GLY B 151 -1  O  THR B 148   N  LYS B 128           
LINK         OE1 GLU A   9                MG    MG A 701     1555   1555  2.63  
CISPEP   1 VAL A   76    ASP A   77          0         7.51                     
CISPEP   2 GLY A  142    GLY A  143          0        -7.35                     
CISPEP   3 GLY B   67    PRO B   68          0         0.87                     
CISPEP   4 ARG B   93    MET B   94          0        12.65                     
SITE     1 AC1  2 GLU A   9  GLU A 121                                          
CRYST1  173.563  173.563  111.810  90.00  90.00 120.00 P 65          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.005762  0.003326  0.000000        0.00000                         
SCALE2      0.000000  0.006653  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008944        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
DBGET integrated database retrieval system