GenomeNet

Database: PDB
Entry: 5L7N
LinkDB: 5L7N
Original site: 5L7N 
HEADER    SIGNALING PROTEIN                       03-JUN-16   5L7N              
TITLE     PLEXIN A1 EXTRACELLULAR FRAGMENT, DOMAINS 7-10 (IPT3-IPT6)            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PLEXIN-A1;                                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: PLEXIN-1;                                                   
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: MOUSE;                                              
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 GENE: PLXNA1, KIAA4053;                                              
SOURCE   6 EXPRESSION_SYSTEM: HOMO SAPIENS;                                     
SOURCE   7 EXPRESSION_SYSTEM_COMMON: HUMAN;                                     
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 9606;                                       
SOURCE   9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 S                                
KEYWDS    IPT DOMAIN, SIGNALING PROTEIN, RECEPTOR, AXON GUIDANCE                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.KONG,B.J.C.JANSSEN,T.MALINAUSKAS,V.R.VANGOOR,C.H.COLES,R.KAUFMANN,  
AUTHOR   2 T.NI,R.J.C.GILBERT,S.PADILLA-PARRA,R.J.PASTERKAMP,E.Y.JONES          
REVDAT   3   29-JUL-20 5L7N    1       COMPND REMARK HETNAM LINK                
REVDAT   3 2                   1       SITE   ATOM                              
REVDAT   2   13-SEP-17 5L7N    1       REMARK                                   
REVDAT   1   15-MAR-17 5L7N    0                                                
JRNL        AUTH   Y.KONG,B.J.JANSSEN,T.MALINAUSKAS,V.R.VANGOOR,C.H.COLES,      
JRNL        AUTH 2 R.KAUFMANN,T.NI,R.J.GILBERT,S.PADILLA-PARRA,R.J.PASTERKAMP,  
JRNL        AUTH 3 E.Y.JONES                                                    
JRNL        TITL   STRUCTURAL BASIS FOR PLEXIN ACTIVATION AND REGULATION.       
JRNL        REF    NEURON                        V.  91   548 2016              
JRNL        REFN                   ISSN 1097-4199                               
JRNL        PMID   27397516                                                     
JRNL        DOI    10.1016/J.NEURON.2016.06.018                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.20 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (DEV_2283: ???)                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 62.80                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 20361                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.232                           
REMARK   3   R VALUE            (WORKING SET) : 0.230                           
REMARK   3   FREE R VALUE                     : 0.270                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.070                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1032                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 62.8256 -  4.2082    1.00     2893   147  0.1996 0.2043        
REMARK   3     2  4.2082 -  3.3402    1.00     2779   148  0.2057 0.2398        
REMARK   3     3  3.3402 -  2.9180    1.00     2764   141  0.2421 0.3177        
REMARK   3     4  2.9180 -  2.6512    1.00     2722   163  0.2609 0.3642        
REMARK   3     5  2.6512 -  2.4612    1.00     2732   144  0.2593 0.3142        
REMARK   3     6  2.4612 -  2.3161    1.00     2721   152  0.2711 0.3357        
REMARK   3     7  2.3161 -  2.2001    0.99     2718   137  0.3434 0.4021        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.330            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.400           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.002           2753                                  
REMARK   3   ANGLE     :  0.519           3752                                  
REMARK   3   CHIRALITY :  0.046            437                                  
REMARK   3   PLANARITY :  0.004            487                                  
REMARK   3   DIHEDRAL  : 14.874           1678                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 4                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: CHAIN 'A' AND (RESID 861 THROUGH 934 )                 
REMARK   3    ORIGIN FOR THE GROUP (A):  30.3325 -23.8216 -12.0202              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4684 T22:   0.2773                                     
REMARK   3      T33:   0.2977 T12:   0.0464                                     
REMARK   3      T13:  -0.0491 T23:   0.0302                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   4.7743 L22:   5.6834                                     
REMARK   3      L33:   4.2252 L12:  -1.5786                                     
REMARK   3      L13:  -0.4936 L23:   1.0935                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.1342 S12:   0.1380 S13:  -0.4432                       
REMARK   3      S21:  -0.1215 S22:   0.0650 S23:   0.0874                       
REMARK   3      S31:   0.7671 S32:   0.3521 S33:   0.0810                       
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    SELECTION: CHAIN 'A' AND (RESID 935 THROUGH 1046 )                
REMARK   3    ORIGIN FOR THE GROUP (A):  24.7799  -2.4290 -18.7286              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.2826 T22:   0.3031                                     
REMARK   3      T33:   0.2813 T12:  -0.0258                                     
REMARK   3      T13:  -0.0297 T23:   0.0107                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.5426 L22:   6.0773                                     
REMARK   3      L33:   3.7465 L12:  -1.6500                                     
REMARK   3      L13:   0.8514 L23:  -3.5276                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0422 S12:   0.0143 S13:  -0.0546                       
REMARK   3      S21:   0.0262 S22:   0.1396 S23:   0.2667                       
REMARK   3      S31:   0.0921 S32:   0.0776 S33:  -0.1121                       
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    SELECTION: CHAIN 'A' AND (RESID 1047 THROUGH 1145 )               
REMARK   3    ORIGIN FOR THE GROUP (A):  34.1454  20.1874 -44.8883              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3774 T22:   0.2736                                     
REMARK   3      T33:   0.2347 T12:   0.0023                                     
REMARK   3      T13:  -0.0909 T23:   0.0301                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   4.5460 L22:   0.8769                                     
REMARK   3      L33:   5.0265 L12:  -0.6474                                     
REMARK   3      L13:  -4.0976 L23:   1.0782                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.1079 S12:   0.0754 S13:   0.1230                       
REMARK   3      S21:  -0.0524 S22:   0.0364 S23:   0.0136                       
REMARK   3      S31:  -0.1438 S32:  -0.1649 S33:  -0.1495                       
REMARK   3   TLS GROUP : 4                                                      
REMARK   3    SELECTION: CHAIN 'A' AND (RESID 1146 THROUGH 1227 )               
REMARK   3    ORIGIN FOR THE GROUP (A):  53.5543  33.8572 -46.7681              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.5485 T22:   0.3959                                     
REMARK   3      T33:   0.7924 T12:  -0.1056                                     
REMARK   3      T13:   0.0419 T23:  -0.2223                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   4.0479 L22:   6.5067                                     
REMARK   3      L33:   3.9481 L12:   4.6393                                     
REMARK   3      L13:  -0.7313 L23:   0.2076                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.2905 S12:  -0.3801 S13:   0.6570                       
REMARK   3      S21:   0.0170 S22:   0.2958 S23:  -1.2092                       
REMARK   3      S31:  -0.7924 S32:   0.7120 S33:  -0.2201                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5L7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-16.                  
REMARK 100 THE DEPOSITION ID IS D_1200000235.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 16-SEP-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : DIAMOND                            
REMARK 200  BEAMLINE                       : I04                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9795                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : IMOSFLM                            
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS 0.1.27                     
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 20394                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.200                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 62.800                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 8.100                              
REMARK 200  R MERGE                    (I) : 0.12000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 9.2000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.27                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.82500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL                         
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 46.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) POLYETHYLENE GLYCOL 3,350,     
REMARK 280  100MM BIS-TRIS PH 5.5 AND 200MM POTASSIUM SODIUM TARTRATE, VAPOR    
REMARK 280  DIFFUSION, SITTING DROP, TEMPERATURE 293.5K                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       62.80000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       62.80000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       37.94000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       41.25500            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       37.94000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       41.25500            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       62.80000            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       37.94000            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       41.25500            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       62.80000            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       37.94000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       41.25500            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A1521  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLU A   858                                                      
REMARK 465     THR A   859                                                      
REMARK 465     GLY A   860                                                      
REMARK 465     ASP A   941                                                      
REMARK 465     CYS A   942                                                      
REMARK 465     SER A   943                                                      
REMARK 465     LEU A  1153                                                      
REMARK 465     SER A  1154                                                      
REMARK 465     PRO A  1155                                                      
REMARK 465     THR A  1156                                                      
REMARK 465     GLY A  1157                                                      
REMARK 465     LEU A  1158                                                      
REMARK 465     LEU A  1159                                                      
REMARK 465     GLU A  1160                                                      
REMARK 465     LEU A  1161                                                      
REMARK 465     LYS A  1162                                                      
REMARK 465     PRO A  1163                                                      
REMARK 465     SER A  1164                                                      
REMARK 465     ASN A  1210                                                      
REMARK 465     LEU A  1211                                                      
REMARK 465     THR A  1212                                                      
REMARK 465     GLY A  1213                                                      
REMARK 465     GLN A  1214                                                      
REMARK 465     HIS A  1215                                                      
REMARK 465     LYS A  1216                                                      
REMARK 465     VAL A  1217                                                      
REMARK 465     PRO A  1228                                                      
REMARK 465     GLY A  1229                                                      
REMARK 465     MET A  1230                                                      
REMARK 465     LEU A  1231                                                      
REMARK 465     GLN A  1232                                                      
REMARK 465     VAL A  1233                                                      
REMARK 465     TYR A  1234                                                      
REMARK 465     SER A  1235                                                      
REMARK 465     ASP A  1236                                                      
REMARK 465     SER A  1237                                                      
REMARK 465     LEU A  1238                                                      
REMARK 465     LEU A  1239                                                      
REMARK 465     THR A  1240                                                      
REMARK 465     LEU A  1241                                                      
REMARK 465     GLY A  1242                                                      
REMARK 465     THR A  1243                                                      
REMARK 465     LYS A  1244                                                      
REMARK 465     HIS A  1245                                                      
REMARK 465     HIS A  1246                                                      
REMARK 465     HIS A  1247                                                      
REMARK 465     HIS A  1248                                                      
REMARK 465     HIS A  1249                                                      
REMARK 465     HIS A  1250                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A 916      -42.01   -134.93                                   
REMARK 500    SER A1000      108.11    -57.10                                   
REMARK 500    ASN A1029     -122.50     56.93                                   
REMARK 500    ASN A1035      102.11   -160.15                                   
REMARK 500    GLU A1054       42.88    -88.86                                   
REMARK 500    ASP A1129     -130.12     52.84                                   
REMARK 500    SER A1200     -165.80   -108.83                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  5L7N A  861  1241  UNP    P70206   PLXA1_MOUSE    861   1241             
SEQADV 5L7N GLU A  858  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N THR A  859  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N GLY A  860  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N GLY A 1242  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N THR A 1243  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N LYS A 1244  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N HIS A 1245  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N HIS A 1246  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N HIS A 1247  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N HIS A 1248  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N HIS A 1249  UNP  P70206              EXPRESSION TAG                 
SEQADV 5L7N HIS A 1250  UNP  P70206              EXPRESSION TAG                 
SEQRES   1 A  393  GLU THR GLY ASP PRO LYS ILE LEU LYS LEU SER PRO GLU          
SEQRES   2 A  393  THR GLY PRO ARG GLN GLY GLY THR ARG LEU THR ILE THR          
SEQRES   3 A  393  GLY GLU ASN LEU GLY LEU ARG PHE GLU ASP VAL ARG LEU          
SEQRES   4 A  393  GLY VAL HIS VAL GLY LYS VAL LEU CYS SER PRO VAL GLU          
SEQRES   5 A  393  SER GLU TYR ILE SER ALA GLU GLN ILE VAL CYS GLU ILE          
SEQRES   6 A  393  GLY ASP ALA SER THR LEU ARG ALA HIS ASP ALA LEU VAL          
SEQRES   7 A  393  GLU VAL CYS VAL ARG ASP CYS SER LEU HIS TYR ARG ALA          
SEQRES   8 A  393  LEU SER PRO LYS ARG PHE THR PHE VAL THR PRO THR PHE          
SEQRES   9 A  393  TYR ARG VAL SER PRO SER ARG GLY PRO LEU SER GLY GLY          
SEQRES  10 A  393  THR TRP ILE GLY ILE GLU GLY SER HIS LEU ASN ALA GLY          
SEQRES  11 A  393  SER ASP VAL ALA VAL SER ILE GLY GLY ARG PRO CYS SER          
SEQRES  12 A  393  PHE SER TRP ARG ASN SER ARG GLU ILE ARG CYS LEU THR          
SEQRES  13 A  393  PRO PRO GLY HIS THR PRO GLY SER ALA PRO ILE VAL ILE          
SEQRES  14 A  393  ASN ILE ASN ARG ALA GLN LEU SER ASN PRO GLU VAL LYS          
SEQRES  15 A  393  TYR ASN TYR THR GLU ASP PRO THR ILE LEU ARG ILE ASP          
SEQRES  16 A  393  PRO GLU TRP SER ILE ASN SER GLY GLY THR LEU LEU THR          
SEQRES  17 A  393  VAL THR GLY THR ASN LEU ALA THR VAL ARG GLU PRO ARG          
SEQRES  18 A  393  ILE ARG ALA LYS TYR GLY GLY ILE GLU ARG GLU ASN SER          
SEQRES  19 A  393  CYS MET VAL TYR ASN ASP THR THR MET VAL CYS ARG ALA          
SEQRES  20 A  393  PRO SER ILE ASP ASN PRO LYS ARG SER PRO PRO GLU LEU          
SEQRES  21 A  393  GLY GLU ARG PRO ASP GLU ILE GLY PHE ILE MET ASP ASN          
SEQRES  22 A  393  VAL ARG THR LEU LEU VAL LEU ASN SER SER SER PHE LEU          
SEQRES  23 A  393  TYR TYR PRO ASP PRO VAL LEU GLU PRO LEU SER PRO THR          
SEQRES  24 A  393  GLY LEU LEU GLU LEU LYS PRO SER SER PRO LEU ILE LEU          
SEQRES  25 A  393  LYS GLY ARG ASN LEU LEU PRO PRO ALA PRO GLY ASN SER          
SEQRES  26 A  393  ARG LEU ASN TYR THR VAL LEU ILE GLY SER THR PRO CYS          
SEQRES  27 A  393  ILE LEU THR VAL SER GLU THR GLN LEU LEU CYS GLU ALA          
SEQRES  28 A  393  PRO ASN LEU THR GLY GLN HIS LYS VAL THR VAL ARG ALA          
SEQRES  29 A  393  GLY GLY PHE GLU PHE SER PRO GLY MET LEU GLN VAL TYR          
SEQRES  30 A  393  SER ASP SER LEU LEU THR LEU GLY THR LYS HIS HIS HIS          
SEQRES  31 A  393  HIS HIS HIS                                                  
HET    NAG  A1301      14                                                       
HET    NAG  A1302      14                                                       
HET    NAG  A1303      14                                                       
HET    EDO  A1304       4                                                       
HET    PEG  A1305       7                                                       
HETNAM     NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE                         
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETNAM     PEG DI(HYDROXYETHYL)ETHER                                            
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   2  NAG    3(C8 H15 N O6)                                               
FORMUL   5  EDO    C2 H6 O2                                                     
FORMUL   6  PEG    C4 H10 O3                                                    
FORMUL   7  HOH   *130(H2 O)                                                    
HELIX    1 AA1 ARG A  890  VAL A  894  5                                   5    
HELIX    2 AA2 GLU A  909  TYR A  912  5                                   4    
HELIX    3 AA3 ASN A 1070  VAL A 1074  5                                   5    
HELIX    4 AA4 VAL A 1131  LEU A 1135  5                                   5    
SHEET    1 AA1 7 LYS A 863  SER A 868  0                                        
SHEET    2 AA1 7 ARG A 879  LEU A 887 -1  O  GLU A 885   N  LYS A 863           
SHEET    3 AA1 7 ALA A 915  ILE A 922 -1  O  GLU A 916   N  GLY A 884           
SHEET    4 AA1 7 VAL A 903  PRO A 907 -1  N  SER A 906   O  GLU A 921           
SHEET    5 AA1 7 VAL A 898  VAL A 900 -1  N  VAL A 900   O  VAL A 903           
SHEET    6 AA1 7 VAL A 935  CYS A 938 -1  O  GLU A 936   N  HIS A 899           
SHEET    7 AA1 7 ARG A 947  LEU A 949 -1  O  ALA A 948   N  VAL A 937           
SHEET    1 AA2 3 THR A 871  PRO A 873  0                                        
SHEET    2 AA2 3 PHE A 954  VAL A 957  1  O  VAL A 957   N  GLY A 872           
SHEET    3 AA2 3 ASP A 932  ALA A 933 -1  N  ALA A 933   O  PHE A 954           
SHEET    1 AA3 8 THR A 960  SER A 965  0                                        
SHEET    2 AA3 8 TRP A 976  SER A 982 -1  O  GLU A 980   N  ARG A 963           
SHEET    3 AA3 8 GLU A1008  LEU A1012 -1  O  CYS A1011   N  ILE A 977           
SHEET    4 AA3 8 ARG A 997  ARG A1004 -1  N  SER A1002   O  ARG A1010           
SHEET    5 AA3 8 ALA A 991  ILE A 994 -1  N  ILE A 994   O  ARG A 997           
SHEET    6 AA3 8 GLY A1020  ILE A1028 -1  O  VAL A1025   N  SER A 993           
SHEET    7 AA3 8 ALA A1031  THR A1043 -1  O  TYR A1042   N  GLY A1020           
SHEET    8 AA3 8 ARG A 968  PRO A 970  1  N  GLY A 969   O  THR A1043           
SHEET    1 AA4 6 THR A1047  ASP A1052  0                                        
SHEET    2 AA4 6 LEU A1063  THR A1069 -1  O  THR A1065   N  ASP A1052           
SHEET    3 AA4 6 THR A1099  ARG A1103 -1  O  CYS A1102   N  LEU A1064           
SHEET    4 AA4 6 ILE A1086  ASN A1096 -1  N  MET A1093   O  VAL A1101           
SHEET    5 AA4 6 ARG A1078  TYR A1083 -1  N  ILE A1079   O  ASN A1090           
SHEET    6 AA4 6 GLU A1123  ILE A1127 -1  O  GLY A1125   N  ARG A1080           
SHEET    1 AA5 2 TRP A1055  ILE A1057  0                                        
SHEET    2 AA5 2 LEU A1143  TYR A1145  1  O  TYR A1145   N  SER A1056           
SHEET    1 AA6 3 VAL A1149  LEU A1150  0                                        
SHEET    2 AA6 3 LEU A1167  ARG A1172 -1  O  ARG A1172   N  VAL A1149           
SHEET    3 AA6 3 GLN A1203  CYS A1206 -1  O  LEU A1204   N  LEU A1169           
SHEET    1 AA7 3 THR A1187  VAL A1188  0                                        
SHEET    2 AA7 3 VAL A1219  ALA A1221 -1  O  ARG A1220   N  THR A1187           
SHEET    3 AA7 3 PHE A1224  PHE A1226 -1  O  PHE A1224   N  ALA A1221           
SSBOND   1 CYS A  905    CYS A  920                          1555   1555  2.03  
SSBOND   2 CYS A  999    CYS A 1011                          1555   1555  2.04  
SSBOND   3 CYS A 1092    CYS A 1102                          1555   1555  2.03  
SSBOND   4 CYS A 1195    CYS A 1206                          1555   1555  2.03  
LINK         ND2 ASN A1041                 C1  NAG A1303     1555   1555  1.44  
LINK         ND2 ASN A1096                 C1  NAG A1301     1555   1555  1.44  
LINK         ND2 ASN A1185                 C1  NAG A1302     1555   1555  1.44  
CISPEP   1 SER A  868    PRO A  869          0         0.77                     
CISPEP   2 SER A  965    PRO A  966          0        -2.43                     
CISPEP   3 ASP A 1052    PRO A 1053          0        -1.30                     
CRYST1   75.880   82.510  125.600  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.013179  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.012120  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007962        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
DBGET integrated database retrieval system