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Database: PDB
Entry: 5MU6
LinkDB: 5MU6
Original site: 5MU6 
HEADER    TRANSFERASE                             12-JAN-17   5MU6              
TITLE     HUMAN N-MYRISTOYLTRANSFERASE (NMT1) WITH MYRISTOYL-COA AND IMP-1088   
TITLE    2 INHIBITOR BOUND                                                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1;                
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N-    
COMPND   5 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1;               
COMPND   6 EC: 2.3.1.97;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: NMT1, NMT;                                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: PRARES;                                    
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET-28                                    
KEYWDS    N-MYRISTOYLATION, INHIBITOR, RHINOVIRUS CAPSULE ASSEMBLY, TRANSFERASE 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    I.PEREZ-DORADO,A.S.BELL,E.W.TATE                                      
REVDAT   4   17-JAN-24 5MU6    1       LINK                                     
REVDAT   3   04-JUL-18 5MU6    1       JRNL                                     
REVDAT   2   23-MAY-18 5MU6    1       JRNL                                     
REVDAT   1   14-FEB-18 5MU6    0                                                
JRNL        AUTH   A.MOUSNIER,A.S.BELL,D.P.SWIEBODA,J.MORALES-SANFRUTOS,        
JRNL        AUTH 2 I.PEREZ-DORADO,J.A.BRANNIGAN,J.NEWMAN,M.RITZEFELD,           
JRNL        AUTH 3 J.A.HUTTON,A.GUEDAN,A.S.ASFOR,S.W.ROBINSON,                  
JRNL        AUTH 4 I.HOPKINS-NAVRATILOVA,A.J.WILKINSON,S.L.JOHNSTON,            
JRNL        AUTH 5 R.J.LEATHERBARROW,T.J.TUTHILL,R.SOLARI,E.W.TATE              
JRNL        TITL   FRAGMENT-DERIVED INHIBITORS OF HUMAN N-MYRISTOYLTRANSFERASE  
JRNL        TITL 2 BLOCK CAPSID ASSEMBLY AND REPLICATION OF THE COMMON COLD     
JRNL        TITL 3 VIRUS.                                                       
JRNL        REF    NAT CHEM                      V.  10   599 2018              
JRNL        REFN                   ESSN 1755-4349                               
JRNL        PMID   29760414                                                     
JRNL        DOI    10.1038/S41557-018-0039-2                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.88 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0073                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 72.18                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 69279                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.206                           
REMARK   3   R VALUE            (WORKING SET) : 0.204                           
REMARK   3   FREE R VALUE                     : 0.247                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.980                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3449                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 72.2320 -  5.4964    1.00     2842   164  0.1799 0.2099        
REMARK   3     2  5.4964 -  4.3628    1.00     2728   134  0.1465 0.1492        
REMARK   3     3  4.3628 -  3.8114    1.00     2693   138  0.1475 0.1635        
REMARK   3     4  3.8114 -  3.4629    1.00     2646   151  0.1650 0.2261        
REMARK   3     5  3.4629 -  3.2147    1.00     2679   141  0.1769 0.2251        
REMARK   3     6  3.2147 -  3.0252    1.00     2636   139  0.2018 0.2496        
REMARK   3     7  3.0252 -  2.8737    1.00     2646   136  0.2066 0.2697        
REMARK   3     8  2.8737 -  2.7486    1.00     2642   143  0.2085 0.2614        
REMARK   3     9  2.7486 -  2.6427    1.00     2638   133  0.2024 0.2659        
REMARK   3    10  2.6427 -  2.5515    1.00     2631   121  0.2128 0.2712        
REMARK   3    11  2.5515 -  2.4718    1.00     2601   140  0.2185 0.2796        
REMARK   3    12  2.4718 -  2.4011    1.00     2622   137  0.2176 0.3141        
REMARK   3    13  2.4011 -  2.3379    0.99     2621   137  0.2224 0.2537        
REMARK   3    14  2.3379 -  2.2808    1.00     2589   163  0.2261 0.2618        
REMARK   3    15  2.2808 -  2.2290    1.00     2645   118  0.2255 0.2569        
REMARK   3    16  2.2290 -  2.1816    1.00     2532   151  0.2416 0.2647        
REMARK   3    17  2.1816 -  2.1379    1.00     2631   141  0.2356 0.2952        
REMARK   3    18  2.1379 -  2.0976    1.00     2611   134  0.2505 0.2903        
REMARK   3    19  2.0976 -  2.0601    1.00     2617   140  0.2358 0.2906        
REMARK   3    20  2.0601 -  2.0252    1.00     2592   127  0.2571 0.3282        
REMARK   3    21  2.0252 -  1.9925    1.00     2646   120  0.2551 0.2926        
REMARK   3    22  1.9925 -  1.9618    0.99     2559   121  0.2838 0.3312        
REMARK   3    23  1.9618 -  1.9330    0.99     2608   125  0.2948 0.3484        
REMARK   3    24  1.9330 -  1.9058    1.00     2597   150  0.3113 0.3771        
REMARK   3    25  1.9058 -  1.8800    1.00     2578   145  0.3161 0.3662        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.230            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.690           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 13.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 17.82                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.008           6670                                  
REMARK   3   ANGLE     :  1.242           9078                                  
REMARK   3   CHIRALITY :  0.051            973                                  
REMARK   3   PLANARITY :  0.005           1130                                  
REMARK   3   DIHEDRAL  : 14.549           2516                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5MU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-17.                  
REMARK 100 THE DEPOSITION ID IS D_1200003008.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 22-NOV-15                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : DIAMOND                            
REMARK 200  BEAMLINE                       : I04-1                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.92819                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS 0.5.17                     
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 69366                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.880                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 72.180                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 7.300                              
REMARK 200  R MERGE                    (I) : 0.25400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 7.8000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.93                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.30                               
REMARK 200  R MERGE FOR SHELL          (I) : 1.65400                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER 2.5.6                                          
REMARK 200 STARTING MODEL: 4C2Y                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 45.96                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 23% (V/W) MME2K, 0.2M KBR, 100 MM        
REMARK 280  SODIUM CITRATE PH 4.5, AND 5% (V/V) GLYCEROL, VAPOR DIFFUSION,      
REMARK 280  SITTING DROP, TEMPERATURE 293K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       39.36500            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       90.36500            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       39.36500            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       90.36500            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   106                                                      
REMARK 465     PRO A   107                                                      
REMARK 465     HIS A   108                                                      
REMARK 465     MET A   109                                                      
REMARK 465     GLU A   110                                                      
REMARK 465     GLU A   111                                                      
REMARK 465     ALA A   112                                                      
REMARK 465     SER A   113                                                      
REMARK 465     LYS A   114                                                      
REMARK 465     GLY B   106                                                      
REMARK 465     PRO B   107                                                      
REMARK 465     HIS B   108                                                      
REMARK 465     MET B   109                                                      
REMARK 465     GLU B   110                                                      
REMARK 465     GLU B   111                                                      
REMARK 465     ALA B   112                                                      
REMARK 465     SER B   113                                                      
REMARK 465     LYS B   114                                                      
REMARK 465     ASN B   409                                                      
REMARK 465     HIS B   410                                                      
REMARK 465     PRO B   411                                                      
REMARK 465     THR B   412                                                      
REMARK 465     HIS B   413                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OE2  GLU B   393     O    HOH B   601              2.03            
REMARK 500   NZ   LYS B   240     O    HOH B   602              2.15            
REMARK 500   OD1  ASP B   448     O    HOH B   603              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A 180     -157.33    -89.57                                   
REMARK 500    TYR A 236     -116.98     49.13                                   
REMARK 500    ILE A 381      -60.05   -131.57                                   
REMARK 500    ASN A 389     -167.58    -76.34                                   
REMARK 500    PHE A 422     -101.07   -110.83                                   
REMARK 500    MET A 456     -128.40     49.73                                   
REMARK 500    LYS A 466       30.35     70.15                                   
REMARK 500    TYR B 180     -157.00    -90.34                                   
REMARK 500    TYR B 236     -117.23     48.71                                   
REMARK 500    ILE B 381      -60.38   -131.46                                   
REMARK 500    PHE B 422     -100.27   -111.18                                   
REMARK 500    MET B 456     -129.33     47.51                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 502  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LEU A 254   O                                                      
REMARK 620 2 MYA A 501   O4A 102.2                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MYA A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue KFK A 505                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MYA B 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AD1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue KFK B 505                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4C2Y   RELATED DB: PDB                                   
REMARK 900 HUMAN N-MYRISTOYLTRANSFERASE (NMT1) WITH MYRISTOYL-COA CO-FACTOR     
REMARK 900 RELATED ID: 4C2Z   RELATED DB: PDB                                   
REMARK 900 HUMAN N-MYRISTOYLTRANSFERASE (NMT1) WITH MYRISTOYL-COA AND           
REMARK 900 INHIBITOR BOUND                                                      
DBREF  5MU6 A  109   496  UNP    P30419   NMT1_HUMAN      29    416             
DBREF  5MU6 B  109   496  UNP    P30419   NMT1_HUMAN      29    416             
SEQADV 5MU6 GLY A  106  UNP  P30419              EXPRESSION TAG                 
SEQADV 5MU6 PRO A  107  UNP  P30419              EXPRESSION TAG                 
SEQADV 5MU6 HIS A  108  UNP  P30419              EXPRESSION TAG                 
SEQADV 5MU6 GLY B  106  UNP  P30419              EXPRESSION TAG                 
SEQADV 5MU6 PRO B  107  UNP  P30419              EXPRESSION TAG                 
SEQADV 5MU6 HIS B  108  UNP  P30419              EXPRESSION TAG                 
SEQRES   1 A  391  GLY PRO HIS MET GLU GLU ALA SER LYS ARG SER TYR GLN          
SEQRES   2 A  391  PHE TRP ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL          
SEQRES   3 A  391  VAL ASN THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN          
SEQRES   4 A  391  ILE ARG GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR          
SEQRES   5 A  391  TRP ASP ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS          
SEQRES   6 A  391  GLU LEU TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP          
SEQRES   7 A  391  ASP ASP ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE          
SEQRES   8 A  391  LEU LEU TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN          
SEQRES   9 A  391  TRP HIS CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU          
SEQRES  10 A  391  VAL GLY PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE          
SEQRES  11 A  391  TYR ASP THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU          
SEQRES  12 A  391  CYS VAL HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO          
SEQRES  13 A  391  VAL LEU ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU          
SEQRES  14 A  391  GLY ILE PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU          
SEQRES  15 A  391  PRO LYS PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER          
SEQRES  16 A  391  LEU ASN PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS          
SEQRES  17 A  391  LEU SER ARG ASN MET THR MET GLN ARG THR MET LYS LEU          
SEQRES  18 A  391  TYR ARG LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG          
SEQRES  19 A  391  PRO MET GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU          
SEQRES  20 A  391  LEU THR ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL          
SEQRES  21 A  391  MET SER GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN          
SEQRES  22 A  391  GLU ASN ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN          
SEQRES  23 A  391  GLY GLU VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO          
SEQRES  24 A  391  SER THR ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS          
SEQRES  25 A  391  ALA ALA TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO          
SEQRES  26 A  391  LEU LEU ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS          
SEQRES  27 A  391  MET LYS GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET          
SEQRES  28 A  391  GLU ASN LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE          
SEQRES  29 A  391  GLY ASP GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS          
SEQRES  30 A  391  CYS PRO SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU          
SEQRES  31 A  391  GLN                                                          
SEQRES   1 B  391  GLY PRO HIS MET GLU GLU ALA SER LYS ARG SER TYR GLN          
SEQRES   2 B  391  PHE TRP ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL          
SEQRES   3 B  391  VAL ASN THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN          
SEQRES   4 B  391  ILE ARG GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR          
SEQRES   5 B  391  TRP ASP ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS          
SEQRES   6 B  391  GLU LEU TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP          
SEQRES   7 B  391  ASP ASP ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE          
SEQRES   8 B  391  LEU LEU TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN          
SEQRES   9 B  391  TRP HIS CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU          
SEQRES  10 B  391  VAL GLY PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE          
SEQRES  11 B  391  TYR ASP THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU          
SEQRES  12 B  391  CYS VAL HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO          
SEQRES  13 B  391  VAL LEU ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU          
SEQRES  14 B  391  GLY ILE PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU          
SEQRES  15 B  391  PRO LYS PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER          
SEQRES  16 B  391  LEU ASN PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS          
SEQRES  17 B  391  LEU SER ARG ASN MET THR MET GLN ARG THR MET LYS LEU          
SEQRES  18 B  391  TYR ARG LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG          
SEQRES  19 B  391  PRO MET GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU          
SEQRES  20 B  391  LEU THR ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL          
SEQRES  21 B  391  MET SER GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN          
SEQRES  22 B  391  GLU ASN ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN          
SEQRES  23 B  391  GLY GLU VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO          
SEQRES  24 B  391  SER THR ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS          
SEQRES  25 B  391  ALA ALA TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO          
SEQRES  26 B  391  LEU LEU ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS          
SEQRES  27 B  391  MET LYS GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET          
SEQRES  28 B  391  GLU ASN LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE          
SEQRES  29 B  391  GLY ASP GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS          
SEQRES  30 B  391  CYS PRO SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU          
SEQRES  31 B  391  GLN                                                          
HET    MYA  A 501      63                                                       
HET     MG  A 502       1                                                       
HET    GOL  A 503       6                                                       
HET    GOL  A 504       6                                                       
HET    KFK  A 505      33                                                       
HET    MYA  B 501      63                                                       
HET     MG  B 502       1                                                       
HET    GOL  B 503       6                                                       
HET    GOL  B 504       6                                                       
HET    KFK  B 505      33                                                       
HETNAM     MYA TETRADECANOYL-COA                                                
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     GOL GLYCEROL                                                         
HETNAM     KFK 1-[5-[3,4-BIS(FLUORANYL)-2-[2-(1,3,5-TRIMETHYLPYRAZOL-           
HETNAM   2 KFK  4-YL)ETHOXY]PHENYL]-1-METHYL-INDAZOL-3-YL]-~{N},~{N}-           
HETNAM   3 KFK  DIMETHYL-METHANAMINE                                            
HETSYN     MYA MYRISTOYL-COA                                                    
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   3  MYA    2(C35 H62 N7 O17 P3 S)                                       
FORMUL   4   MG    2(MG 2+)                                                     
FORMUL   5  GOL    4(C3 H8 O3)                                                  
FORMUL   7  KFK    2(C25 H29 F2 N5 O)                                           
FORMUL  13  HOH   *456(H2 O)                                                    
HELIX    1 AA1 PHE A  119  GLN A  123  5                                   5    
HELIX    2 AA2 ASP A  165  TYR A  180  1                                  16    
HELIX    3 AA3 SER A  193  ARG A  202  1                                  10    
HELIX    4 AA4 LEU A  207  GLN A  209  5                                   3    
HELIX    5 AA5 LYS A  252  ARG A  255  5                                   4    
HELIX    6 AA6 VAL A  259  LEU A  273  1                                  15    
HELIX    7 AA7 ASN A  302  VAL A  309  1                                   8    
HELIX    8 AA8 THR A  319  TYR A  327  1                                   9    
HELIX    9 AA9 GLU A  342  LYS A  344  5                                   3    
HELIX   10 AB1 ASP A  345  LYS A  358  1                                  14    
HELIX   11 AB2 SER A  367  TYR A  376  1                                  10    
HELIX   12 AB3 PRO A  430  LYS A  445  1                                  16    
HELIX   13 AB4 GLU A  457  PHE A  461  5                                   5    
HELIX   14 AB5 GLY A  487  VAL A  491  5                                   5    
HELIX   15 AB6 PHE B  119  GLN B  123  5                                   5    
HELIX   16 AB7 ASP B  165  TYR B  180  1                                  16    
HELIX   17 AB8 SER B  193  ARG B  202  1                                  10    
HELIX   18 AB9 LEU B  207  GLN B  209  5                                   3    
HELIX   19 AC1 LYS B  252  ARG B  255  5                                   4    
HELIX   20 AC2 VAL B  259  LEU B  273  1                                  15    
HELIX   21 AC3 ASN B  302  VAL B  309  1                                   8    
HELIX   22 AC4 THR B  319  TYR B  327  1                                   9    
HELIX   23 AC5 GLU B  342  LYS B  344  5                                   3    
HELIX   24 AC6 ASP B  345  LEU B  357  1                                  13    
HELIX   25 AC7 LYS B  358  PHE B  360  5                                   3    
HELIX   26 AC8 SER B  367  TYR B  376  1                                  10    
HELIX   27 AC9 PRO B  430  LYS B  445  1                                  16    
HELIX   28 AD1 GLU B  457  PHE B  461  5                                   5    
HELIX   29 AD2 GLY B  487  VAL B  491  5                                   5    
SHEET    1 AA111 PHE A 156  ALA A 160  0                                        
SHEET    2 AA111 HIS A 211  VAL A 216 -1  O  ARG A 215   N  THR A 157           
SHEET    3 AA111 LEU A 222  ILE A 235 -1  O  VAL A 223   N  VAL A 214           
SHEET    4 AA111 THR A 238  VAL A 250 -1  O  LYS A 240   N  ILE A 233           
SHEET    5 AA111 ALA A 279  ALA A 283  1  O  VAL A 280   N  VAL A 243           
SHEET    6 AA111 GLY A 468  TYR A 479 -1  O  TYR A 477   N  TYR A 281           
SHEET    7 AA111 GLY A 292  SER A 300 -1  N  CYS A 294   O  LEU A 474           
SHEET    8 AA111 VAL A 449  LEU A 453 -1  O  PHE A 450   N  ARG A 299           
SHEET    9 AA111 ALA A 418  SER A 421  1  N  ALA A 419   O  ASN A 451           
SHEET   10 AA111 VAL A 394  THR A 402 -1  N  TYR A 401   O  TYR A 420           
SHEET   11 AA111 LEU A 362  PRO A 364  0                                        
SHEET    1 AA211 LEU A 338  PRO A 340  0                                        
SHEET    2 AA211 ILE A 382  GLU A 388 -1  O  VAL A 386   N  ARG A 339           
SHEET    3 AA211 VAL A 394  THR A 402 -1  O  LEU A 398   N  PHE A 385           
SHEET    4 AA211 ALA A 418  SER A 421 -1  O  TYR A 420   N  TYR A 401           
SHEET    5 AA211 VAL A 449  LEU A 453  1  O  ASN A 451   N  ALA A 419           
SHEET    6 AA211 GLY A 292  SER A 300 -1  N  ARG A 299   O  PHE A 450           
SHEET    7 AA211 GLY A 468  TYR A 479 -1  O  LEU A 474   N  CYS A 294           
SHEET    8 AA211 ALA A 279  ALA A 283 -1  N  TYR A 281   O  TYR A 477           
SHEET    9 AA211 THR A 238  VAL A 250  1  N  VAL A 243   O  VAL A 280           
SHEET   10 AA211 LEU A 222  ILE A 235 -1  N  ILE A 233   O  LYS A 240           
SHEET   11 AA211 VAL A 425  HIS A 426  0                                        
SHEET    1 AA3 3 PHE A 188  PHE A 190  0                                        
SHEET    2 AA3 3 SER A 405  ILE A 407 -1  O  THR A 406   N  ARG A 189           
SHEET    3 AA3 3 SER A 415  LEU A 416 -1  O  LEU A 416   N  SER A 405           
SHEET    1 AA411 PHE B 156  ALA B 160  0                                        
SHEET    2 AA411 HIS B 211  VAL B 216 -1  O  ARG B 215   N  THR B 157           
SHEET    3 AA411 LEU B 222  ILE B 235 -1  O  VAL B 223   N  VAL B 214           
SHEET    4 AA411 THR B 238  VAL B 250 -1  O  LYS B 240   N  ILE B 233           
SHEET    5 AA411 ALA B 279  ALA B 283  1  O  VAL B 280   N  VAL B 243           
SHEET    6 AA411 GLY B 468  TYR B 479 -1  O  GLN B 475   N  ALA B 283           
SHEET    7 AA411 GLY B 292  SER B 300 -1  N  HIS B 298   O  GLY B 468           
SHEET    8 AA411 VAL B 449  LEU B 453 -1  O  ALA B 452   N  TRP B 297           
SHEET    9 AA411 ALA B 418  SER B 421  1  N  ALA B 419   O  ASN B 451           
SHEET   10 AA411 VAL B 394  THR B 402 -1  N  TYR B 401   O  TYR B 420           
SHEET   11 AA411 LEU B 362  VAL B 365  0                                        
SHEET    1 AA511 LEU B 338  PRO B 340  0                                        
SHEET    2 AA511 ILE B 382  GLU B 388 -1  O  VAL B 386   N  ARG B 339           
SHEET    3 AA511 VAL B 394  THR B 402 -1  O  LEU B 398   N  PHE B 385           
SHEET    4 AA511 ALA B 418  SER B 421 -1  O  TYR B 420   N  TYR B 401           
SHEET    5 AA511 VAL B 449  LEU B 453  1  O  ASN B 451   N  ALA B 419           
SHEET    6 AA511 GLY B 292  SER B 300 -1  N  TRP B 297   O  ALA B 452           
SHEET    7 AA511 GLY B 468  TYR B 479 -1  O  GLY B 468   N  HIS B 298           
SHEET    8 AA511 ALA B 279  ALA B 283 -1  N  ALA B 283   O  GLN B 475           
SHEET    9 AA511 THR B 238  VAL B 250  1  N  VAL B 243   O  VAL B 280           
SHEET   10 AA511 LEU B 222  ILE B 235 -1  N  ILE B 233   O  LYS B 240           
SHEET   11 AA511 VAL B 425  HIS B 426  0                                        
SHEET    1 AA6 3 PHE B 188  PHE B 190  0                                        
SHEET    2 AA6 3 SER B 405  ILE B 407 -1  O  THR B 406   N  ARG B 189           
SHEET    3 AA6 3 SER B 415  LEU B 416 -1  O  LEU B 416   N  SER B 405           
LINK         O   LEU A 254                MG    MG A 502     1555   1555  2.52  
LINK         O4A MYA A 501                MG    MG A 502     1555   1555  2.92  
LINK         O   LEU B 254                MG    MG B 502     1555   1555  2.56  
CISPEP   1 PRO A  288    LYS A  289          0       -10.78                     
CISPEP   2 PRO B  288    LYS B  289          0       -10.64                     
SITE     1 AC1 28 TYR A 117  GLN A 118  PHE A 119  TRP A 120                    
SITE     2 AC1 28 TYR A 180  VAL A 181  PHE A 247  LEU A 248                    
SITE     3 AC1 28 CYS A 249  VAL A 250  ARG A 255  SER A 256                    
SITE     4 AC1 28 ARG A 258  VAL A 259  ALA A 260  PRO A 261                    
SITE     5 AC1 28 THR A 268  PHE A 277  THR A 282  LEU A 287                    
SITE     6 AC1 28 TYR A 479   MG A 502  HOH A 622  HOH A 665                    
SITE     7 AC1 28 HOH A 693  HOH A 726  HOH A 756  HOH A 758                    
SITE     1 AC2  7 LEU A 254  ARG A 255  SER A 256  LYS A 257                    
SITE     2 AC2  7 ARG A 258  VAL A 259  MYA A 501                               
SITE     1 AC3  7 LYS A 289  PRO A 290  VAL A 291  LEU A 478                    
SITE     2 AC3  7 TRP A 481  LYS A 482  CYS A 483                               
SITE     1 AC4  5 GLU A 244  TRP A 374  TYR A 423  VAL A 494                    
SITE     2 AC4  5 GLN A 496                                                     
SITE     1 AC5 13 VAL A 181  PHE A 188  PHE A 190  ASN A 246                    
SITE     2 AC5 13 THR A 282  TYR A 296  HIS A 298  SER A 405                    
SITE     3 AC5 13 TYR A 420  ASN A 451  ALA A 452  LEU A 495                    
SITE     4 AC5 13 GLN A 496                                                     
SITE     1 AC6 31 ARG B 115  TYR B 117  GLN B 118  PHE B 119                    
SITE     2 AC6 31 TRP B 120  TYR B 180  VAL B 181  ILE B 245                    
SITE     3 AC6 31 PHE B 247  LEU B 248  CYS B 249  VAL B 250                    
SITE     4 AC6 31 ARG B 255  SER B 256  LYS B 257  ARG B 258                    
SITE     5 AC6 31 VAL B 259  ALA B 260  PRO B 261  THR B 268                    
SITE     6 AC6 31 PHE B 277  ALA B 279  TYR B 281  THR B 282                    
SITE     7 AC6 31 LEU B 287   MG B 502  HOH B 642  HOH B 661                    
SITE     8 AC6 31 HOH B 695  HOH B 723  HOH B 729                               
SITE     1 AC7  6 LEU B 254  SER B 256  LYS B 257  ARG B 258                    
SITE     2 AC7  6 VAL B 259  MYA B 501                                          
SITE     1 AC8  7 PRO B 126  LYS B 289  LEU B 478  TRP B 481                    
SITE     2 AC8  7 LYS B 482  CYS B 483  HOH B 614                               
SITE     1 AC9  6 GLU B 244  TRP B 374  TYR B 423  VAL B 494                    
SITE     2 AC9  6 GLN B 496  HOH B 635                                          
SITE     1 AD1 14 VAL B 181  PHE B 188  ARG B 189  PHE B 190                    
SITE     2 AD1 14 ASN B 246  THR B 282  TYR B 296  HIS B 298                    
SITE     3 AD1 14 SER B 405  TYR B 420  ASN B 451  ALA B 452                    
SITE     4 AD1 14 LEU B 495  GLN B 496                                          
CRYST1   78.730  180.730   58.990  90.00  90.00  90.00 P 21 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.012702  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.005533  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.016952        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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