HEADER HYDROLASE 30-AUG-18 5QEG
TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF PTP1B IN
TITLE 2 COMPLEX WITH COMPOUND_FMOPL000278A
CAVEAT 5QEG SEVERAL RESIDUES ARE NOT PROPERLY LINKED WITH SHORT C-N BOND
CAVEAT 2 5QEG DISTANCE FOR CERTAIN CONFORMERS.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CATALYTIC DOMAIN;
COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1B,PTP-1B;
COMPND 6 EC: 3.1.3.48;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PTPN1, PTP1B;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B
KEYWDS PANDDA, SGC - DIAMOND I04-1 FRAGMENT SCREENING, PROTEIN TYROSINE
KEYWDS 2 PHOSPHATASE, PTP, PROTEIN TYROSINE PHOSPHATASE 1B, PTP1B, ENZYME,
KEYWDS 3 ALLOSTERY, MULTICONFORMER, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.A.KEEDY,Z.B.HILL,J.T.BIEL,E.KANG,T.J.RETTENMAIER,J.BRANDAO-NETO,
AUTHOR 2 F.VON DELFT,J.A.WELLS,J.S.FRASER
REVDAT 2 06-FEB-19 5QEG 1 COMPND JRNL
REVDAT 1 10-OCT-18 5QEG 0
JRNL AUTH D.A.KEEDY,Z.B.HILL,J.T.BIEL,E.KANG,T.J.RETTENMAIER,
JRNL AUTH 2 J.BRANDAO-NETO,N.M.PEARCE,F.VON DELFT,J.A.WELLS,J.S.FRASER
JRNL TITL AN EXPANDED ALLOSTERIC NETWORK IN PTP1B BY MULTITEMPERATURE
JRNL TITL 2 CRYSTALLOGRAPHY, FRAGMENT SCREENING, AND COVALENT TETHERING.
JRNL REF ELIFE V. 7 2018
JRNL REFN ESSN 2050-084X
JRNL PMID 29877794
JRNL DOI 10.7554/ELIFE.36307
REMARK 2
REMARK 2 RESOLUTION. 1.97 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.10.1_2155
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.73
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 35287
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.197
REMARK 3 R VALUE (WORKING SET) : 0.196
REMARK 3 FREE R VALUE : 0.236
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.940
REMARK 3 FREE R VALUE TEST SET COUNT : 1391
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 44.7370 - 4.2421 1.00 3566 144 0.1844 0.2231
REMARK 3 2 4.2421 - 3.3675 1.00 3441 138 0.1767 0.2075
REMARK 3 3 3.3675 - 2.9419 1.00 3394 138 0.1933 0.2409
REMARK 3 4 2.9419 - 2.6730 1.00 3382 139 0.1945 0.2321
REMARK 3 5 2.6730 - 2.4814 1.00 3342 141 0.1924 0.2290
REMARK 3 6 2.4814 - 2.3351 1.00 3395 140 0.2019 0.2591
REMARK 3 7 2.3351 - 2.2182 1.00 3339 138 0.2182 0.2518
REMARK 3 8 2.2182 - 2.1216 1.00 3344 137 0.2280 0.2809
REMARK 3 9 2.1216 - 2.0399 1.00 3315 135 0.2569 0.3312
REMARK 3 10 2.0399 - 1.9695 1.00 3378 141 0.2829 0.3205
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.20
REMARK 3 SHRINKAGE RADIUS : 1.10
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.520
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 33.56
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.68
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.027 8776
REMARK 3 ANGLE : 2.365 11957
REMARK 3 CHIRALITY : 0.183 1250
REMARK 3 PLANARITY : 0.012 1578
REMARK 3 DIHEDRAL : 20.279 3418
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5QEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-18.
REMARK 100 THE DEPOSITION ID IS D_1001401845.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-SEP-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67290
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970
REMARK 200 RESOLUTION RANGE LOW (A) : 77.467
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.12800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6100
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 1.21400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.090
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 62.55
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 0.3 M MAGNESIUM
REMARK 280 ACETATE, 0.1 M HEPES PH 7.5, 0.1% BETA-MERCAPTOETHANOL, 13-14%
REMARK 280 PEG 8000, 2% ETHANOL, VAPOR DIFFUSION, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.40500
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.81000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.81000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.40500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13710 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 283
REMARK 465 ASP A 284
REMARK 465 SER A 285
REMARK 465 SER A 286
REMARK 465 VAL A 287
REMARK 465 GLN A 288
REMARK 465 ASP A 289
REMARK 465 GLN A 290
REMARK 465 TRP A 291
REMARK 465 LYS A 292
REMARK 465 GLU A 293
REMARK 465 LEU A 294
REMARK 465 SER A 295
REMARK 465 HIS A 296
REMARK 465 GLU A 297
REMARK 465 ASP A 298
REMARK 465 LEU A 299
REMARK 465 GLU A 300
REMARK 465 PRO A 301
REMARK 465 PRO A 302
REMARK 465 PRO A 303
REMARK 465 GLU A 304
REMARK 465 HIS A 305
REMARK 465 ILE A 306
REMARK 465 PRO A 307
REMARK 465 PRO A 308
REMARK 465 PRO A 309
REMARK 465 PRO A 310
REMARK 465 ARG A 311
REMARK 465 PRO A 312
REMARK 465 PRO A 313
REMARK 465 LYS A 314
REMARK 465 ARG A 315
REMARK 465 ILE A 316
REMARK 465 LEU A 317
REMARK 465 GLU A 318
REMARK 465 PRO A 319
REMARK 465 HIS A 320
REMARK 465 ASN A 321
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HE21 GLN A 61 O HOH A 501 0.34
REMARK 500 HE21 GLN A 61 O HOH A 501 0.34
REMARK 500 HZ2 LYS A 73 O HOH A 502 0.52
REMARK 500 HZ2 LYS A 73 O HOH A 502 0.52
REMARK 500 NE2 GLN A 61 O HOH A 501 0.98
REMARK 500 NE2 GLN A 61 O HOH A 501 0.98
REMARK 500 HZ1 LYS A 73 O HOH A 504 1.04
REMARK 500 HZ1 LYS A 73 O HOH A 504 1.04
REMARK 500 HG CYS A 231 HD11 ILE A 246 1.17
REMARK 500 HG CYS A 231 HD11 ILE A 246 1.17
REMARK 500 NZ LYS A 73 O HOH A 502 1.18
REMARK 500 NZ LYS A 73 O HOH A 502 1.18
REMARK 500 HE3 LYS A 131 O HOH A 516 1.26
REMARK 500 HE3 LYS A 131 O HOH A 516 1.26
REMARK 500 HD12 LEU A 83 HG CYS A 226 1.34
REMARK 500 H ASP A 240 O HOH A 511 1.43
REMARK 500 H ASP A 240 O HOH A 511 1.43
REMARK 500 HE22 GLN A 61 O HOH A 501 1.49
REMARK 500 HE22 GLN A 61 O HOH A 501 1.49
REMARK 500 HD21 ASN A 40 O HOH A 524 1.52
REMARK 500 HD21 ASN A 40 O HOH A 524 1.52
REMARK 500 H LYS A 39 O HOH A 517 1.53
REMARK 500 H LYS A 39 O HOH A 517 1.53
REMARK 500 OE1 GLN A 262 O HOH A 503 1.78
REMARK 500 OE1 GLN A 262 O HOH A 503 1.78
REMARK 500 O HOH A 563 O HOH A 653 1.82
REMARK 500 CE LYS A 73 O HOH A 502 1.82
REMARK 500 CE LYS A 73 O HOH A 502 1.82
REMARK 500 NZ LYS A 73 O HOH A 504 1.87
REMARK 500 NZ LYS A 73 O HOH A 504 1.87
REMARK 500 OE1 GLU A 161 O HOH A 505 1.87
REMARK 500 OE1 GLU A 161 O HOH A 505 1.87
REMARK 500 O HOH A 605 O HOH A 687 1.93
REMARK 500 OE1 GLN A 262 O HOH A 503 1.96
REMARK 500 OE1 GLN A 262 O HOH A 503 1.96
REMARK 500 O HOH A 630 O HOH A 685 1.99
REMARK 500 OE2 GLU A 200 O HOH A 506 2.01
REMARK 500 OE2 GLU A 200 O HOH A 506 2.01
REMARK 500 CE LYS A 131 O HOH A 516 2.04
REMARK 500 CE LYS A 131 O HOH A 516 2.04
REMARK 500 O HOH A 631 O HOH A 698 2.05
REMARK 500 OG SER A 28 O HOH A 507 2.05
REMARK 500 OG SER A 28 O HOH A 507 2.05
REMARK 500 CD GLN A 61 O HOH A 501 2.10
REMARK 500 CD GLN A 61 O HOH A 501 2.10
REMARK 500 O HOH A 579 O HOH A 688 2.11
REMARK 500 O HOH A 503 O HOH A 636 2.13
REMARK 500 OE1 GLN A 61 O HOH A 508 2.13
REMARK 500 OE1 GLN A 61 O HOH A 508 2.13
REMARK 500 O HOH A 601 O HOH A 663 2.13
REMARK 500
REMARK 500 THIS ENTRY HAS 55 CLOSE CONTACTS
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLN A 85 C GLY A 86 N -0.161
REMARK 500 GLN A 85 C GLY A 86 N -0.161
REMARK 500 TRP A 96 CB TRP A 96 CG -0.109
REMARK 500 TRP A 96 CB TRP A 96 CG -0.109
REMARK 500 TRP A 96 CG TRP A 96 CD1 -0.116
REMARK 500 TRP A 96 CG TRP A 96 CD1 -0.116
REMARK 500 GLU A 129 CD GLU A 129 OE1 -0.079
REMARK 500 GLU A 129 CD GLU A 129 OE1 -0.079
REMARK 500 GLY A 277 C ALA A 278 N 0.158
REMARK 500 GLY A 277 C ALA A 278 N 0.158
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 GLU A 2 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES
REMARK 500 GLU A 2 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES
REMARK 500 GLN A 9 N - CA - C ANGL. DEV. = -21.1 DEGREES
REMARK 500 GLN A 9 N - CA - C ANGL. DEV. = -21.1 DEGREES
REMARK 500 ALA A 17 N - CA - C ANGL. DEV. = -20.6 DEGREES
REMARK 500 ALA A 17 N - CA - C ANGL. DEV. = -20.6 DEGREES
REMARK 500 LEU A 37 CA - CB - CG ANGL. DEV. = 14.7 DEGREES
REMARK 500 LEU A 37 CA - CB - CG ANGL. DEV. = 14.7 DEGREES
REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES
REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES
REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES
REMARK 500 LEU A 110 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES
REMARK 500 LEU A 110 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES
REMARK 500 CYS A 121 CA - CB - SG ANGL. DEV. = 9.7 DEGREES
REMARK 500 CYS A 121 CA - CB - SG ANGL. DEV. = 9.7 DEGREES
REMARK 500 CYS A 121 CA - CB - SG ANGL. DEV. = 8.2 DEGREES
REMARK 500 CYS A 121 CA - CB - SG ANGL. DEV. = 8.2 DEGREES
REMARK 500 GLN A 123 CA - C - N ANGL. DEV. = 13.8 DEGREES
REMARK 500 GLN A 123 CA - C - N ANGL. DEV. = 13.8 DEGREES
REMARK 500 GLN A 123 O - C - N ANGL. DEV. = -13.1 DEGREES
REMARK 500 GLN A 123 O - C - N ANGL. DEV. = -13.1 DEGREES
REMARK 500 MET A 133 CG - SD - CE ANGL. DEV. = -12.5 DEGREES
REMARK 500 MET A 133 CG - SD - CE ANGL. DEV. = -12.5 DEGREES
REMARK 500 LYS A 141 CD - CE - NZ ANGL. DEV. = -15.0 DEGREES
REMARK 500 LYS A 141 CD - CE - NZ ANGL. DEV. = -15.0 DEGREES
REMARK 500 LEU A 144 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES
REMARK 500 LEU A 144 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES
REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES
REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES
REMARK 500 LYS A 150 CD - CE - NZ ANGL. DEV. = 14.0 DEGREES
REMARK 500 LYS A 150 CD - CE - NZ ANGL. DEV. = 14.0 DEGREES
REMARK 500 ASP A 181 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES
REMARK 500 ASP A 181 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES
REMARK 500 PRO A 206 C - N - CD ANGL. DEV. = -13.9 DEGREES
REMARK 500 PRO A 206 C - N - CD ANGL. DEV. = -13.9 DEGREES
REMARK 500 CYS A 215 CA - CB - SG ANGL. DEV. = 10.1 DEGREES
REMARK 500 CYS A 215 CA - CB - SG ANGL. DEV. = 10.1 DEGREES
REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES
REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 9 -97.27 -50.86
REMARK 500 GLN A 9 -97.27 -50.86
REMARK 500 ILE A 10 -50.16 -9.17
REMARK 500 ILE A 10 -50.16 -9.17
REMARK 500 SER A 15 49.84 -159.52
REMARK 500 SER A 15 49.84 -159.52
REMARK 500 ALA A 17 -92.51 -45.07
REMARK 500 ALA A 17 -92.51 -45.07
REMARK 500 ALA A 18 -94.44 24.12
REMARK 500 ALA A 18 -94.44 24.12
REMARK 500 GLU A 62 -36.32 -137.91
REMARK 500 GLU A 62 -36.32 -137.91
REMARK 500 GLN A 123 82.65 -62.26
REMARK 500 GLN A 123 82.65 -62.26
REMARK 500 LYS A 150 -169.54 -117.94
REMARK 500 LYS A 150 -169.54 -117.94
REMARK 500 GLN A 166 19.45 89.92
REMARK 500 GLN A 166 19.45 89.92
REMARK 500 PRO A 206 -37.76 -35.53
REMARK 500 PRO A 206 -37.76 -35.53
REMARK 500 CYS A 215 -133.04 -128.94
REMARK 500 CYS A 215 -133.04 -128.94
REMARK 500 CYS A 215 -127.73 -131.74
REMARK 500 CYS A 215 -127.73 -131.74
REMARK 500 ILE A 219 -30.24 -135.44
REMARK 500 ILE A 219 -30.24 -135.44
REMARK 500 PRO A 241 34.66 -64.63
REMARK 500 PRO A 241 34.66 -64.63
REMARK 500 LEU A 260 107.44 -48.81
REMARK 500 LEU A 260 107.44 -48.81
REMARK 500 ILE A 261 108.37 75.60
REMARK 500 ILE A 261 108.37 75.60
REMARK 500 ILE A 261 99.03 92.40
REMARK 500 ILE A 261 99.03 92.40
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GRY A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GRY A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 403
DBREF 5QEG A 1 321 UNP P18031 PTN1_HUMAN 1 321
SEQADV 5QEG SER A 32 UNP P18031 CYS 32 ENGINEERED MUTATION
SEQADV 5QEG VAL A 92 UNP P18031 CYS 92 ENGINEERED MUTATION
SEQRES 1 A 321 MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SER
SEQRES 2 A 321 GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS GLU
SEQRES 3 A 321 ALA SER ASP PHE PRO SER ARG VAL ALA LYS LEU PRO LYS
SEQRES 4 A 321 ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO PHE
SEQRES 5 A 321 ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN ASP
SEQRES 6 A 321 TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA GLN
SEQRES 7 A 321 ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN THR
SEQRES 8 A 321 VAL GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SER
SEQRES 9 A 321 ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS GLY
SEQRES 10 A 321 SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU GLU
SEQRES 11 A 321 LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU THR
SEQRES 12 A 321 LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL ARG
SEQRES 13 A 321 GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR ARG
SEQRES 14 A 321 GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP PHE
SEQRES 15 A 321 GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE LEU
SEQRES 16 A 321 PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU HIS
SEQRES 17 A 321 GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG
SEQRES 18 A 321 SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU LEU
SEQRES 19 A 321 MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE LYS
SEQRES 20 A 321 LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY LEU
SEQRES 21 A 321 ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU ALA
SEQRES 22 A 321 VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SER
SEQRES 23 A 321 VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP LEU
SEQRES 24 A 321 GLU PRO PRO PRO GLU HIS ILE PRO PRO PRO PRO ARG PRO
SEQRES 25 A 321 PRO LYS ARG ILE LEU GLU PRO HIS ASN
HET GRY A 401 60
HET GRY A 402 60
HET TRS A 403 20
HETNAM GRY ~{N}1-(4,6-DIMETHYLPYRIMIDIN-2-YL)BENZENE-1,4-DIAMINE
HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HETSYN TRS TRIS BUFFER
FORMUL 2 GRY 2(C12 H14 N4)
FORMUL 4 TRS C4 H12 N O3 1+
FORMUL 5 HOH *202(H2 O)
HELIX 1 AA1 GLU A 2 GLY A 14 1 13
HELIX 2 AA2 SER A 15 ALA A 27 1 13
HELIX 3 AA3 LEU A 37 ASN A 44 5 8
HELIX 4 AA4 THR A 91 LYS A 103 1 13
HELIX 5 AA5 PRO A 188 SER A 201 1 14
HELIX 6 AA6 GLY A 220 ARG A 238 1 19
HELIX 7 AA7 ASP A 240 VAL A 244 5 5
HELIX 8 AA8 ASP A 245 ARG A 254 1 10
HELIX 9 AA9 THR A 263 MET A 282 1 20
SHEET 1 AA1 9 ARG A 56 LYS A 58 0
SHEET 2 AA1 9 TYR A 66 MET A 74 -1 O ALA A 69 N ILE A 57
SHEET 3 AA1 9 ARG A 79 THR A 84 -1 O TYR A 81 N ILE A 72
SHEET 4 AA1 9 VAL A 211 HIS A 214 1 O VAL A 213 N ILE A 82
SHEET 5 AA1 9 GLY A 106 MET A 109 1 N VAL A 108 O VAL A 212
SHEET 6 AA1 9 THR A 168 TYR A 176 1 O PHE A 174 N VAL A 107
SHEET 7 AA1 9 TYR A 153 ASN A 162 -1 N THR A 154 O HIS A 175
SHEET 8 AA1 9 LEU A 140 ILE A 149 -1 N LYS A 141 O GLU A 161
SHEET 9 AA1 9 MET A 133 PHE A 135 -1 N PHE A 135 O LEU A 140
SHEET 1 AA2 2 MET A 114 GLU A 115 0
SHEET 2 AA2 2 SER A 118 LEU A 119 -1 O SER A 118 N GLU A 115
LINK O CGLU A 6 CD1CILE A 10 1555 1555 1.54
LINK O DGLU A 6 CD1DILE A 10 1555 1555 1.54
LINK CD CGLU A 76 NH2CARG A 238 1555 1555 1.26
LINK CD DGLU A 76 NH2DARG A 238 1555 1555 1.26
LINK OE1CGLU A 76 NH2CARG A 238 1555 1555 1.24
LINK OE1DGLU A 76 NH2DARG A 238 1555 1555 1.24
LINK OE2CGLU A 76 NH2CARG A 238 1555 1555 1.29
LINK OE2DGLU A 76 NH2DARG A 238 1555 1555 1.29
SITE 1 AC1 8 PRO A 89 GLU A 132 MET A 133 ILE A 134
SITE 2 AC1 8 PHE A 135 LYS A 239 GRY A 402 HOH A 542
SITE 1 AC2 6 GLN A 123 LYS A 131 GLU A 132 MET A 133
SITE 2 AC2 6 GRY A 401 HOH A 558
SITE 1 AC3 6 HIS A 54 LYS A 128 GLU A 129 GLU A 130
SITE 2 AC3 6 HOH A 534 HOH A 606
CRYST1 89.451 89.451 106.215 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011179 0.006454 0.000000 0.00000
SCALE2 0.000000 0.012909 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009415 0.00000
(ATOM LINES ARE NOT SHOWN.)
END
