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Database: PDB
Entry: 5VDE
LinkDB: 5VDE
Original site: 5VDE 
HEADER    METAL BINDING PROTEIN                   02-APR-17   5VDE              
TITLE     CRYSTAL STRUCTURE OF CU(I)-LOADED YEAST ATX1: CRYSTAL FORM I          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: METAL HOMEOSTASIS FACTOR ATX1;                             
COMPND   3 CHAIN: A, B, C, D;                                                   
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 /  
SOURCE   3 S288C);                                                              
SOURCE   4 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   5 ORGANISM_TAXID: 559292;                                              
SOURCE   6 STRAIN: ATCC 204508 / S288C;                                         
SOURCE   7 GENE: ATX1, YNL259C, N0840;                                          
SOURCE   8 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   9 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE  10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)                                  
KEYWDS    ATX1, METALLOCHAPERONE, COPPER TRANSFER, METAL-BINDING DOMAIN,        
KEYWDS   2 FERREDOXIN-LIKE FOLD, METAL BINDING PROTEIN                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.LEE,M.J.MAHER                                                       
REVDAT   3   04-OCT-23 5VDE    1       LINK                                     
REVDAT   2   26-FEB-20 5VDE    1       REMARK                                   
REVDAT   1   07-FEB-18 5VDE    0                                                
JRNL        AUTH   M.LEE,N.D.G.COORAY,M.J.MAHER                                 
JRNL        TITL   THE CRYSTAL STRUCTURES OF A COPPER-BOUND METALLOCHAPERONE    
JRNL        TITL 2 FROM SACCHAROMYCES CEREVISIAE.                               
JRNL        REF    J. INORG. BIOCHEM.            V. 177   368 2017              
JRNL        REFN                   ISSN 1873-3344                               
JRNL        PMID   28865724                                                     
JRNL        DOI    10.1016/J.JINORGBIO.2017.08.009                              
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.65 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0158                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 97.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 31480                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.166                           
REMARK   3   R VALUE            (WORKING SET) : 0.164                           
REMARK   3   FREE R VALUE                     : 0.206                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.200                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1710                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.65                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.69                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2129                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 89.03                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2450                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 127                          
REMARK   3   BIN FREE R VALUE                    : 0.3020                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2244                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 2                                       
REMARK   3   SOLVENT ATOMS            : 228                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 19.97                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.63000                                              
REMARK   3    B22 (A**2) : 0.28000                                              
REMARK   3    B33 (A**2) : -0.38000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -1.44000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.095         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.099         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.070         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.121         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.966                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.946                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2336 ; 0.020 ; 0.020       
REMARK   3   BOND LENGTHS OTHERS               (A):  2337 ; 0.002 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  3154 ; 1.980 ; 1.995       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  5484 ; 1.026 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   301 ; 5.954 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    86 ;46.131 ;26.279       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   492 ;14.193 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     4 ;28.744 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   382 ; 0.125 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2473 ; 0.009 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   395 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1154 ; 1.904 ; 1.618       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1153 ; 1.852 ; 1.614       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1441 ; 2.737 ; 2.406       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  1442 ; 2.756 ; 2.410       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1182 ; 3.345 ; 2.112       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  1182 ; 3.338 ; 2.112       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  1702 ; 5.246 ; 2.971       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  2607 ; 6.881 ;20.961       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  2560 ; 6.798 ;20.459       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5VDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-17.                  
REMARK 100 THE DEPOSITION ID IS D_1000227262.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 24-JUN-16                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.3                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : AUSTRALIAN SYNCHROTRON             
REMARK 200  BEAMLINE                       : MX2                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.954                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 34104                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.650                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.3                               
REMARK 200  DATA REDUNDANCY                : 4.900                              
REMARK 200  R MERGE                    (I) : 0.11800                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.2000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.70                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 89.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.70                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 1CC8                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 43.75                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.3), 24% (W/V)          
REMARK 280  PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K            
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       40.02700            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2, 3                                                 
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 3                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D                                  
REMARK 350   BIOMT1   2  1.000000  0.000000  0.000000      -27.23964            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000      -50.00558            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ALA A     2                                                      
REMARK 465     MET B     1                                                      
REMARK 465     MET C     1                                                      
REMARK 465     ALA C     2                                                      
REMARK 465     MET D     1                                                      
REMARK 465     ALA D     2                                                      
REMARK 465     GLU D     3                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH C   213     O    HOH C   225              2.13            
REMARK 500   O    HOH A   258     O    HOH B   211              2.19            
REMARK 500   O    HOH A   223     O    HOH A   250              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH C   248     O    HOH D   230     2847     2.09            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             CU1 A 101  CU                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  15   SG                                                     
REMARK 620 2 CYS A  18   SG  120.7                                              
REMARK 620 3 CYS B  15   SG  107.1  97.6                                        
REMARK 620 4 CYS B  18   SG   99.0 112.0 121.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             CU1 C 101  CU                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS C  15   SG                                                     
REMARK 620 2 CYS C  18   SG  119.8                                              
REMARK 620 3 CYS D  15   SG  108.1  96.9                                        
REMARK 620 4 CYS D  18   SG  101.6 111.5 120.2                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 101                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 C 101                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5VCB   RELATED DB: PDB                                   
DBREF  5VDE A    1    73  UNP    P38636   ATX1_YEAST       1     73             
DBREF  5VDE B    1    73  UNP    P38636   ATX1_YEAST       1     73             
DBREF  5VDE C    1    73  UNP    P38636   ATX1_YEAST       1     73             
DBREF  5VDE D    1    73  UNP    P38636   ATX1_YEAST       1     73             
SEQRES   1 A   73  MET ALA GLU ILE LYS HIS TYR GLN PHE ASN VAL VAL MET          
SEQRES   2 A   73  THR CYS SER GLY CYS SER GLY ALA VAL ASN LYS VAL LEU          
SEQRES   3 A   73  THR LYS LEU GLU PRO ASP VAL SER LYS ILE ASP ILE SER          
SEQRES   4 A   73  LEU GLU LYS GLN LEU VAL ASP VAL TYR THR THR LEU PRO          
SEQRES   5 A   73  TYR ASP PHE ILE LEU GLU LYS ILE LYS LYS THR GLY LYS          
SEQRES   6 A   73  GLU VAL ARG SER GLY LYS GLN LEU                              
SEQRES   1 B   73  MET ALA GLU ILE LYS HIS TYR GLN PHE ASN VAL VAL MET          
SEQRES   2 B   73  THR CYS SER GLY CYS SER GLY ALA VAL ASN LYS VAL LEU          
SEQRES   3 B   73  THR LYS LEU GLU PRO ASP VAL SER LYS ILE ASP ILE SER          
SEQRES   4 B   73  LEU GLU LYS GLN LEU VAL ASP VAL TYR THR THR LEU PRO          
SEQRES   5 B   73  TYR ASP PHE ILE LEU GLU LYS ILE LYS LYS THR GLY LYS          
SEQRES   6 B   73  GLU VAL ARG SER GLY LYS GLN LEU                              
SEQRES   1 C   73  MET ALA GLU ILE LYS HIS TYR GLN PHE ASN VAL VAL MET          
SEQRES   2 C   73  THR CYS SER GLY CYS SER GLY ALA VAL ASN LYS VAL LEU          
SEQRES   3 C   73  THR LYS LEU GLU PRO ASP VAL SER LYS ILE ASP ILE SER          
SEQRES   4 C   73  LEU GLU LYS GLN LEU VAL ASP VAL TYR THR THR LEU PRO          
SEQRES   5 C   73  TYR ASP PHE ILE LEU GLU LYS ILE LYS LYS THR GLY LYS          
SEQRES   6 C   73  GLU VAL ARG SER GLY LYS GLN LEU                              
SEQRES   1 D   73  MET ALA GLU ILE LYS HIS TYR GLN PHE ASN VAL VAL MET          
SEQRES   2 D   73  THR CYS SER GLY CYS SER GLY ALA VAL ASN LYS VAL LEU          
SEQRES   3 D   73  THR LYS LEU GLU PRO ASP VAL SER LYS ILE ASP ILE SER          
SEQRES   4 D   73  LEU GLU LYS GLN LEU VAL ASP VAL TYR THR THR LEU PRO          
SEQRES   5 D   73  TYR ASP PHE ILE LEU GLU LYS ILE LYS LYS THR GLY LYS          
SEQRES   6 D   73  GLU VAL ARG SER GLY LYS GLN LEU                              
HET    CU1  A 101       1                                                       
HET    CU1  C 101       1                                                       
HETNAM     CU1 COPPER (I) ION                                                   
FORMUL   5  CU1    2(CU 1+)                                                     
FORMUL   7  HOH   *228(H2 O)                                                    
HELIX    1 AA1 CYS A   15  LYS A   28  1                                  14    
HELIX    2 AA2 PRO A   52  LYS A   62  1                                  11    
HELIX    3 AA3 CYS B   15  LYS B   28  1                                  14    
HELIX    4 AA4 PRO B   52  LYS B   62  1                                  11    
HELIX    5 AA5 CYS C   15  LYS C   28  1                                  14    
HELIX    6 AA6 PRO C   52  LYS C   62  1                                  11    
HELIX    7 AA7 CYS D   15  LYS D   28  1                                  14    
HELIX    8 AA8 PRO D   52  LYS D   62  1                                  11    
SHEET    1 AA1 4 VAL A  33  SER A  39  0                                        
SHEET    2 AA1 4 LEU A  44  THR A  49 -1  O  ASP A  46   N  ASP A  37           
SHEET    3 AA1 4 LYS A   5  VAL A  11 -1  N  TYR A   7   O  VAL A  47           
SHEET    4 AA1 4 VAL A  67  GLN A  72 -1  O  LYS A  71   N  GLN A   8           
SHEET    1 AA2 4 VAL B  33  SER B  39  0                                        
SHEET    2 AA2 4 LEU B  44  THR B  49 -1  O  ASP B  46   N  ASP B  37           
SHEET    3 AA2 4 LYS B   5  VAL B  11 -1  N  LYS B   5   O  THR B  49           
SHEET    4 AA2 4 VAL B  67  GLN B  72 -1  O  LYS B  71   N  GLN B   8           
SHEET    1 AA3 4 VAL C  33  SER C  39  0                                        
SHEET    2 AA3 4 LEU C  44  THR C  49 -1  O  ASP C  46   N  ASP C  37           
SHEET    3 AA3 4 LYS C   5  VAL C  11 -1  N  LYS C   5   O  THR C  49           
SHEET    4 AA3 4 VAL C  67  GLN C  72 -1  O  LYS C  71   N  GLN C   8           
SHEET    1 AA4 4 VAL D  33  SER D  39  0                                        
SHEET    2 AA4 4 LEU D  44  THR D  49 -1  O  ASP D  46   N  ASP D  37           
SHEET    3 AA4 4 LYS D   5  VAL D  11 -1  N  PHE D   9   O  VAL D  45           
SHEET    4 AA4 4 VAL D  67  GLN D  72 -1  O  ARG D  68   N  ASN D  10           
LINK         SG  CYS A  15                CU   CU1 A 101     1555   1555  2.31  
LINK         SG  CYS A  18                CU   CU1 A 101     1555   1555  2.36  
LINK        CU   CU1 A 101                 SG  CYS B  15     1555   1555  2.27  
LINK        CU   CU1 A 101                 SG  CYS B  18     1555   1555  2.40  
LINK         SG  CYS C  15                CU   CU1 C 101     1555   1555  2.30  
LINK         SG  CYS C  18                CU   CU1 C 101     1555   1555  2.42  
LINK        CU   CU1 C 101                 SG  CYS D  15     1555   1555  2.30  
LINK        CU   CU1 C 101                 SG  CYS D  18     1555   1555  2.38  
CISPEP   1 GLU A   30    PRO A   31          0         3.98                     
CISPEP   2 GLU B   30    PRO B   31          0        15.17                     
CISPEP   3 GLU C   30    PRO C   31          0         8.07                     
CISPEP   4 GLU D   30    PRO D   31          0         4.90                     
SITE     1 AC1  4 CYS A  15  CYS A  18  CYS B  15  CYS B  18                    
SITE     1 AC2  4 CYS C  15  CYS C  18  CYS D  15  CYS D  18                    
CRYST1   35.976   80.054   50.763  90.00  99.91  90.00 P 1 21 1      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.027796  0.000000  0.004858        0.00000                         
SCALE2      0.000000  0.012492  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019998        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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