KEGG   Clostridioides difficile 630Derm: CD630DERM_34870
Entry
CD630DERM_34870   CDS       T03785                                 
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
pdf  Clostridioides difficile 630Derm
Pathway
pdf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CD630DERM_34870 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdf03021]
    CD630DERM_34870 (rho)
   03019 Messenger RNA biogenesis [BR:pdf03019]
    CD630DERM_34870 (rho)
Transcription machinery [BR:pdf03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CD630DERM_34870 (rho)
Messenger RNA biogenesis [BR:pdf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CD630DERM_34870 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 Spore_III_AA OB_RNB AAA_22 AAA
Other DBs
NCBI-ProteinID: CEK00201
Position
1:complement(4077159..4078748)
AA seq 529 aa
MILDDKVLEGLGSKTLVELREIAKELKIKSITTYKKNELIEIINSKSKNEEKVNEETKEK
NEDIKEDIKNRKENIERESIEKEVEYKSPTKSYNKKEIDTQNISQNQEHRNQRNDYNKTT
SVNDSNKSSNISNRMVRNNNKNYYMPKQVDESKIVDEFNTSKEDEVVGVLEILPDGFGFL
RGSNYLSTEGDVYVSPSQIRRFNMKTGDKIKGITRHPKSGEKFRALLYVQKINDENPDTA
IQRNAFETLTPIFPEERLTLETNRNEIATRIIDLISPIGKGQRGLIVAPPKAGKTVLLKS
VANSIAKNHPNVELIVLLIDERPEEVTDMKESIEGDVIYSTFDQVSSHHVKVAEMVLNRA
QRLVEHGKDVVILLDSITRLARAYNLTISPTGRTLSGGIDPGALHGPKKFFGAARNIRQG
GSLTILGTALVETGSRMDDVIFEEFKGTGNMELHLDRKLAEKRIFPAIDIYKSGTRRDDL
LLDDEEKTALWRLRREMSNNSVMEITDKVIELIKRTKDNKEFVKSIKNL
NT seq 1590 nt   +upstreamnt  +downstreamnt
ttgattttagatgataaagtattagaaggattaggtagtaagaccttagttgagctacga
gagatagctaaagaattaaaaataaaatcaattactacatataagaaaaatgagttaatt
gagattataaattccaaaagtaaaaatgaggaaaaagtaaacgaagagactaaagaaaaa
aatgaagatattaaagaagacataaagaatagaaaagaaaatatagagcgtgaaagtata
gaaaaagaagttgaatataagagccctaccaaatcatacaacaagaaagaaatagatacc
caaaatatttcccaaaaccaagaacatagaaatcaaagaaatgactataataagacaacg
agtgtaaatgatagtaataagtcatcaaatatatctaatagaatggtcagaaataataat
aaaaactattatatgcctaaacaagttgatgaatctaagatagtagatgaatttaacaca
tcaaaagaggatgaagtagtaggtgtacttgaaattctaccagatggatttggtttttta
agaggttcaaattatttgtctactgaaggagatgtttacgtttcaccatctcaaataaga
agatttaatatgaaaacaggagacaagattaagggaataactagacatccaaaaagtgga
gagaaatttagagcacttttatatgttcaaaaaataaatgatgaaaaccctgacacagct
atacaaagaaatgcgtttgagacattaacaccaatatttccagaagaacgacttacactg
gaaactaatagaaatgaaatagctacaagaattatagatttaatttcacctataggaaaa
ggacaaagaggattgatagtagcacctccaaaagctgggaaaacagttcttttaaaaagc
gttgcaaatagcatagctaaaaatcatccaaatgttgaacttatagtactccttatagat
gaaagaccagaggaagttactgatatgaaagaatctattgaaggagacgttatatattcc
acttttgaccaagtatcaagtcatcatgtcaaggttgcagagatggtgttaaatagagct
caaagattagttgaacatggtaaagatgtagtaattttactagatagtataactagattg
gcaagggcatataaccttacaatatctcctacaggtagaactttatctggaggtattgac
cctggtgcacttcatggacctaaaaagttctttggtgcagcaaggaatattagacagggt
ggttctttgacaatattaggaacagcattggttgaaactggttctaggatggatgatgta
atatttgaggaatttaaaggtacaggaaatatggagctacatttagatagaaaattagca
gaaaaaagaatattccctgcaatagatatttacaagtctggtacaagaagagatgattta
ttgcttgatgatgaagaaaagactgctctttggagattaagaagagaaatgagtaataat
tcagtaatggaaattacagataaagtcattgaacttataaagagaactaaggacaataaa
gagtttgtaaaatcaataaagaatttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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