KEGG   Parabacteroides distasonis: BDI_1161
Entry
BDI_1161          CDS       T00549                                 
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
pdi  Parabacteroides distasonis
Pathway
pdi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BDI_1161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdi03019]
    BDI_1161
Enzymes [BR:pdi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BDI_1161
Messenger RNA biogenesis [BR:pdi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BDI_1161
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 CMS1 Phage_integrase P-loop_SecA
Other DBs
NCBI-ProteinID: ABR42924
UniProt: A6LB60
Position
complement(1348101..1349366)
AA seq 421 aa
MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII
QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA
LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR
QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLE
NPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIA
TDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLKDIQ
KLIGKEVPIAGGHMYETKEVKAAVAEKKEAIKQESKRRNMFGSKRDGSYWRNKKRAANSS
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgacatttgaagatttagatttgatagaaccgatacgtaaggctcttgtgcaagaaggt
tatacgactccaacacctatacaatcagaagcgattcccatcgtttcgcaaggttatgat
ttattgggttgcgcccagacaggaaccggtaagacggcggccttctccatcccgattatc
cagcggttatatctccagaagaagaaaggttacaaacggggtatcaaggcattgatcctt
acgcctacccgtgagcttgccatccagatcggagagagctttgccgcttacggccgtttc
gctggattacgccatacggtgatattcgggggagtagggcagaagccccagacggaagcc
ttggaaagaggcatcgatatattaatcgctacgccgggacgtctgctggacttgatcgga
caaggattcatccacttggataccttggagtatttcgtcttagacgaggcggaccgtatg
ttggacatgggctttatccatgacatcaagcgtattttaccgctattgcccaagaaacgc
cagtccttgttcttctccgctaccatgccccctgagatcgagcgcttggcaggtacgatc
ttgagcgagccgcaaaaggtggaagtaaccccggcctcatcgaccgtggacgcgatcgac
caatccgtttatttcgtcgagaaggccgagaagatcaacttgctgaaaagcttgttggag
aacccggaactggaatccgtattgatctttacccgtacgaaacacggggcggacaaggtg
gcccgtgtcttgtcgaaagcggagataggggcggaggcgatccatggcaacaagagccag
actgcccgccagcgtgccttgacgaatttcaaggatcatacgacccgtgtgctgatcgct
acggatatcgccgcccgtggaatcgacgtggatcatctgacacacgtcattaactatgag
cttcctaacgtacccgagacttatgtacatcggatcgggcgtacgggtcgtgcgggccgt
gaaggtgtggcgttctctttctgcgacgccgaggaggtacctttgttgaaagatatccag
aaactgatcggcaaggaagtccccatagccggtggccatatgtatgagaccaaggaggtg
aaagccgccgtagccgagaagaaagaagcgatcaagcaagagtcgaaacgccgtaatatg
ttcggaagcaaacgtgacggtagttactggcgtaacaagaagcgtgccgccaattcttct
aagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (72)   

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