KEGG   Pseudoalteromonas donghaensis: D0907_09685
Entry
D0907_09685       CDS       T05890                                 
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
pdj  Pseudoalteromonas donghaensis
Pathway
pdj03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pdj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    D0907_09685 (ruvB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pdj03400]
    D0907_09685 (ruvB)
Enzymes [BR:pdj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     D0907_09685 (ruvB)
DNA repair and recombination proteins [BR:pdj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     D0907_09685 (ruvB)
    RecFOR pathway proteins
     D0907_09685 (ruvB)
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_22 Mg_chelatase AAA_16 AAA_3 AAA_14 nSTAND3 NTPase_1 AAA_2 Rad17 Sigma54_activat AAA_18 RNA_helicase TIP49 AAA_17 MCM Bac_DnaA Sigma54_activ_2 AAA_24 NB-ARC AAA_28 ABC_tran AAA_19 Resolvase TsaE ATP-synt_ab T2SSE bpMoxR
Other DBs
NCBI-ProteinID: AXV65522
Position
complement(2128936..2129940)
AA seq 334 aa
MIEADRLIDASEQSNEDSVDRAIRPKLLNDYTGQPHVKQQMEIFIEAARHRGEALDHLLI
FGPPGLGKTTLANIVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP
QVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQR
LEFYSVEDLSKIVARSARYLDLIMCDEGAVEIAKRSRGTPRIANRLLRRVRDYTQVKSDG
KVNAEVAEQALDMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEEKETIEDV
IEPFLIQQGFIQRTPRGRLVSDIAYLHFGLTPDK
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgattgaagcagatcgcttaattgatgcgagtgaacaaagtaatgaagacagtgtcgat
cgtgcaatacgtccaaaactattaaacgactacacaggccagccgcatgttaagcaacaa
atggaaatttttattgaagccgctcgtcatcgtggtgaagcgttagaccatttactcatt
tttggtccgccgggtttgggtaaaacaacactggctaatattgtagcgaatgagcttaat
gtaaacattaaaacgacttcagggccggttcttgaaaaagcgggcgacttagccgcgcta
ttaactaaccttgaagaaggcgatgtactgtttattgatgaaattcaccgcttaagtcca
caagtagaagaaatactttaccccgcaatggaagattatcaactcgatattatgattggt
gaaggtcctgcggcacgatcaattaagctcgatttaccgcctttcacattaataggggct
acaacgcgtgctggctcgttaacatcgccattacgagatcgttttggcattgtgcaacgc
ttagagttttattcggttgaagatttatcaaaaattgttgcccgctctgctcgatattta
gatttaatcatgtgtgacgaaggcgccgttgaaattgctaaacgctcacgcggtacacca
cgaatagcaaacagacttttgcgccgagtacgagattacacgcaagttaaatcagacggt
aaagtaaatgccgaagtcgctgaacaagcacttgatatgatcgatgttgataaaagcggt
tttgattacatggaccgaaaataccttcttgccatcattgaaaagtttatgggtggccct
gttggtctcgataacttagcggctgccattggcgaagaaaaagagactattgaagatgtc
attgagccatttttaattcaacaaggatttattcaacgcacgcccagagggcgactcgtt
tctgatattgcctaccttcattttggtcttaccccagataaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (32)   
   Pfam (32)   
All databases (40)   

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