KEGG T02161: PADK2

Pseudomonas aeruginosa DK2: PADK2_22495

Entry

PADK2_22495       CDS       T02161

Symbol

sbcB

Name

(GenBank) exonuclease I

K01141

exodeoxyribonuclease I [EC:3.1.11.1]

Organism

pdk Pseudomonas aeruginosa DK2

Pathway

pdk03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:pdk00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    PADK2_22495 (sbcB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pdk03400]
    PADK2_22495 (sbcB)
Enzymes [BR:pdk01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     PADK2_22495 (sbcB)
DNA repair and recombination proteins [BR:pdk03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     PADK2_22495 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PADK2_22495 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PADK2_22495 (sbcB)

SSDB

Motif

Pfam:

Exonuc_X-T_C RNase_T

Other DBs

NCBI-ProteinID:

AFM66762

Position

complement(4852770..4854206)

AA seq 478 aa
MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI
TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLEHGQAHDALSDV
RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVALPL
AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV
VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY
DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE
SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

NT seq 1437 nt +upstreamnt +downstreamnt
gtgaacgcgagtattttttggtacgactacgaaaccaccggcatcgaccctcgccgcgac
cggccgttgcagatcgccgggatccgcacggacgaggcgctgaacgagatcggcgagccg
atgaacctgtattgccgtcccagcgacgatatcctgccccaccctatggcttgcctgatc
accggcatcactccccagcggctggccgagcgggggctgtccgaggccgacttcatgacc
cgggtacacgcccagctggcgcagccggcgacctgcgtggccggctacaactccctgcgc
ttcgacgacgaagtgacgcgctacagcctgtaccgcaacttcttcgatccctacgcccgc
gagtggcaaggcggcaatagccgctgggacctgatcgacatggtccgtaccgcctatgcc
ctgcgcccggagggcatccagtggccgcagctggacggccggctgtcgctgaagctggaa
atgctcaccgcggcgaacggcctggagcatgggcaggcccacgacgcgctttccgatgtc
cgcgccaccattgccctggcccgcctgatccgtcagcgccagccgcgcctgtacgattac
ctctaccagttgcgcagcaagcacaaggtgctcgaccaggtacgcctgctgcagccgctg
gtgcatgtctccggacgcttttccgcggagcgccatttcctctcggtggccctgccgctg
gcctggcacccgcgcaaccgcaatgctctgatcgtctgcgacctctgcgccgatcccgcg
ccgctgctggagttgtcggccgaagacttgcgcaggcgcctgtatacccgtcgcgacgaa
ctggccgagggcgagttgccggtgccgctgaagcagatccaggtcaaccgttgcccggtg
gtggcgccgctgtcggtattgcgcgccgaggatcgccagcgaaccggcatcgaactcgag
gagtgccagcgaaaagccgagctgttgcgccagcatcaaaccgtctgggcggacaaactg
acagcgctatatggcgaagaaagtttctccgccagcgacgaccccgagcaacagttgtat
gacggatttattggcgatcgggatcgacgcctttgtgaacagctgcgccttgccgaaccg
gagcaattggccaaagaacaatggcccttcgacgatgcccgtttgcaggagttgttcttt
cgctatcgtgcgcgaaatttcccggaaactttaaatgtggccgagcgccaacaatgggaa
agcttctgccgcaatcgtttgtcccatgaagaatacggcgcaccgaatactttgccggcc
ttcgaggcggcgctggaggcttgtcggcaagagcagggcggcacattgccggcggtactt
gcggcctggcgcgattacgccgcggaactgcgtcaacgctattcgctggagacttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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