KEGG   Parascardovia denticolens: PSDT_0825
Entry
PSDT_0825         CDS       T03978                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
pdo  Parascardovia denticolens
Pathway
pdo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pdo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PSDT_0825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pdo03400]
    PSDT_0825
DNA repair and recombination proteins [BR:pdo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PSDT_0825
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PSDT_0825
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_29 AAA_16 AAA_21 RsgA_GTPase nSTAND1 AAA_23 nSTAND3 DnaJ_CXXCXGXG APS_kinase AAA_24 AAA_22 Viral_helicase1 NACHT cobW MMR_HSR1
Other DBs
NCBI-ProteinID: BAR05344
UniProt: E6JYC4
Position
complement(999887..1002862)
AA seq 991 aa
MAELIEHNDRSMRVAPGAIVDPLENLPHDQKILIHGAREHNLKNVDLAIPRNQMVVFTGL
SGSGKSSLAFDTLFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKTTNR
NPRSTVGTITEIYDYLRLLFARVGVPHCPVCGLTVSAQTPQQIVDTLLRLPERTRFQILA
PVARGRKGEFVELLETLRSDGYARAIIDGERHELSEEIKLAKQKKHIIEVIVDRLVIKEG
IRQRLTDSVETALRLGNGIIVIDYVDKDQDDPHRRQPFSEKRSCPNGHELELDEIEPRTF
SFNAPYGACPECTGIGYKLEIDPELVVSDPEKTLREGAIEPWSTSKTQERYYTHLLEGLS
EELGFSLDQPWQDLPEEARHAILFGHDFKVKVSYRNRWGRNVEYSSGFEGVVRTLMRKHE
ETDSDLMKQYYESYMREVPCPVCQGKRLKPEVLSVTIEGQSIIDLCDMPVSQCGQWMKNL
TLQGAAATIATEVLKEIRARLDFLNDVGLNYLTLSRAAATLSGGEAQRIRLATQIGSGLV
GVMYVLDEPSIGLHQRDNSRLIHTLHNLRDLGNTLIVVEHDQETIETADWLVDIGPGAGE
KGGEVVYSGKASGLTKATRSVTADYIAGRKAILLPARRRAIDPDKELTVVGARENNLKNL
TVDIPLGVMTAITGVSGSGKSTLINQILYPVLADKLNGARIVPGKHTRVKGVDQLRKVIH
VDQNPIGRTPRSNPATYTGVWDKIRQLFAKTPEAQVRGYGPGRFSFNVKGGRCEACHGDG
TLKIEMNFLPDVYVPCEVCHGKRYNRETLEVTYNGKTVSDVLDMPIEEAARFFKAYPAIS
RYLDTLVDVGLGYIRLGQPAPTLSGGESQRVKLATELQKRSDGRTIYILDEPTTGLHFDD
VNKLLQVLQSLVDKGNTIVVIEHNLDVIKCADWIIDLGPEGGDAGGRIVAQGIPEEVAKV
EGSWTGQYLKAMLADPHARPAHARSSKAKES
NT seq 2976 nt   +upstreamnt  +downstreamnt
atggctgaattgatcgagcataacgaccgaagcatgagggtggcgccgggagccatcgtg
gatcctttggaaaacctgccccacgaccagaagatcctcatacacggagcccgcgaacat
aacctgaagaacgtggacctggccatcccccgcaatcagatggtcgtcttcaccggcctg
tccggctcaggcaagtcgtctttggccttcgacacccttttcgcggaagggcaaagaagg
tacgtggaatccctgtccgcctacgcccgccaattcctgggccagatggacaaaccggac
gtggacttcatcgaaggcctgagcccggccgtctccatcgaccagaaaaccaccaaccgc
aacccccgttccactgtggggaccatcaccgagatctacgattatctccgtctcctcttc
gcccgggtgggcgtgccccattgccccgtctgcggcctgaccgtttccgcccagaccccc
caacagatcgtggacacccttctgagactgccggagcgcacccggttccaaatcctggct
cccgtggcccgagggcgcaaaggcgaattcgtggagcttctggagactttgcggtccgac
ggctacgccagggccatcatcgacggcgagcgccatgagctgtcggaagagatcaagctg
gccaagcagaagaagcacatcatcgaggtcatcgtcgaccgtctggtcatcaaagaaggg
atccgccaacgtctgaccgattcggtggagaccgctttgcgcttgggcaacggcatcatc
gtcatcgactacgtggacaaggaccaggacgatccccaccgtcgccagcccttctcggag
aaacgcagctgccccaacggccacgagctggagctggatgagatcgagccccggaccttc
tccttcaacgccccttacggggcttgccctgaatgcaccgggatcggctacaagctggaa
atcgaccccgagctggtcgtctccgacccggaaaagaccttgcgggagggggccatcgag
ccttggtccacttccaagacccaggaacgctactacacccaccttttggaaggcctgtcc
gaagaattgggattctccctggaccagccctggcaggacctgccggaagaggcccggcat
gccatccttttcggccacgatttcaaggtgaaggtctcctaccgtaaccgctggggccgc
aacgtcgaatattccagcggcttcgaaggcgtggtccgcaccctcatgcgcaagcatgaa
gagaccgattccgatctgatgaagcagtattacgagtcctatatgagggaagtgccttgt
ccggtctgccaaggcaagaggctcaagcccgaggtcctgtccgtgaccatcgaaggccag
tcgatcatcgacttgtgcgacatgccggtctcccaatgcggccagtggatgaaaaacctg
accttgcagggggcggcggccaccatcgccaccgaagtgctcaaggagatccgggcccgg
ctggacttcctcaacgacgtgggtctgaactatctgaccctgtcccgggcggccgccacc
ttgtccggcggggaggcccagcggatccgcctggccacccagatcggttccggcctggtc
ggagtcatgtacgtcttggatgagccttccatcggtcttcatcaaagggataacagccgg
ctcatccacacacttcataacctgcgtgacttgggtaacaccctgattgtggtcgaacat
gaccaagagaccatcgaaaccgctgattggctggtggacatcggccctggggcaggggag
aagggcggggaagtcgtctactccggaaaggcatccggcttgaccaaggcaacccggtcc
gtgaccgccgactatatcgccggccgcaaggccatcctcctgccagcccgacgtcgcgcg
atcgacccggacaaggaactgaccgtcgtcggagccagggagaacaacctgaaaaacctg
accgtggacatccccctaggggtcatgaccgccatcaccggcgtatccgggtccggcaag
tccaccctgatcaaccagatcctttaccccgtcctggccgacaagctcaacggggcccgg
atcgtccccggcaagcatacccgggtgaaaggggtcgaccagctgcgcaaggtcatccat
gtggatcagaaccccatcggccgcacccctcgttccaaccccgccacttacacgggcgtc
tgggacaagatccgccaacttttcgccaagacccccgaggcccaggtccgcggctatggc
cccggccgcttctccttcaatgtcaaaggcggccggtgcgaggcctgccacggggatggg
accctcaagatcgagatgaatttcctgccggacgtctacgtgccctgcgaagtctgccat
ggcaaacgctacaaccgcgagaccttggaagtcacctacaacggcaagaccgtctccgac
gtcctggacatgcccatcgaggaggcggcccgtttcttcaaggcctatccggccatctcc
cgctatctggacaccctggtggacgtgggtctcggctacatccgtctgggccagcccgcc
ccaaccttgtccggcggggaaagccaaagggtcaagttggccaccgagctgcaaaagagg
tccgatggacggaccatctacatcctggacgagcccaccaccggcctgcatttcgatgac
gtcaacaagctcctgcaggtcctgcaaagcctggtggataaaggcaacaccatcgtggtc
atcgagcataacctggacgtgatcaaatgcgccgattggatcatcgatctgggccccgaa
ggcggggacgccggcgggcgaatcgtggcccagggaatcccggaagaggtggccaaggtc
gaagggtcctggaccgggcagtacctgaaggcgatgttggccgacccccacgcccggccc
gctcacgcccgctcttcgaaagcgaaggaatcatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (33)   

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