KEGG   Polynucleobacter duraquae: CL55_00012550
Entry
CL55_00012550     CDS       T04207                                 
Name
(GenBank) Superfamily II DNA and RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
pdq  Polynucleobacter duraquae
Pathway
pdq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CL55_00012550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdq03019]
    CL55_00012550
Enzymes [BR:pdq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CL55_00012550
Messenger RNA biogenesis [BR:pdq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CL55_00012550
SSDB
Motif
Pfam: DEAD Helicase_C AAA_19 ResIII AAA_22 P-loop_SecA CMS1
Other DBs
NCBI-ProteinID: AKD25588
UniProt: A0A0E3V1M1
Position
1221736..1223031
AA seq 431 aa
MLFTDLGLSEPILRAISEEGYTSPTPIQEKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL
QRLSSTAKTGGKRQLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA
IAAGLDILVATPGRLLDLMSQNCVSLANIEILVLDEADRMLDMGFLRDIKKILAVLPKQR
QNLLFSATFSTEIKALADGLLNSPALIEVARSNSTNDAIAQLIHPVDRNQKHPLLAHLIK
SNQWQQVLVFTRTKHGANKLVTQLEKDSITAMAIHGNKSQSARTKALAEFKDGKITVLVA
TDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIE
KLIKQKLPQEIIAGFEPDPNAVAQPIQLRSQQHQQSRKPRPGNAGGGKSGGSGGARPAAK
RSSPPKRSFNR
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgttatttacagatcttggtttgtcagaacctattcttcgcgcgattagcgaggaaggc
tataccagccccacccctattcaagaaaaatcaattcccgccgtattgaagggtggagat
ttacttgccgccgctcaaactggtaccggtaaaactgccggctttaccctgccgattctt
cagcgcttaagcagtacagctaaaactggtggcaagcgtcaattacgtgtattgattttg
actcctacccgcgaactagctgctcaggttcaagaatccgtcgtaacctatggcaaatat
acgggtcttaaatcgactgttatttttggtggcgtcggcgctaatcctcaaatcaaagcc
attgctgcagggctcgatattttggtggcaacaccgggccgcttgctcgacttaatgtca
cagaactgtgtctcactcgccaatattgaaattctggtacttgatgaagcagatcgcatg
ttggatatgggctttttgcgggacattaaaaagatcctagcagtattaccaaagcaacgg
cagaacttattattttcagcgaccttctccaccgagatcaaagcattagctgatggcttg
ctgaattcaccagcattaattgaagtagcgcgaagcaacagcaccaacgacgctattgcc
caactcatccacccagtagacagaaaccaaaaacaccctttgttagcccatctgattaaa
tcaaatcagtggcaacaggttctggtgtttactcgtactaaacatggcgctaataaattg
gttactcagcttgagaaagatagtattaccgccatggctatccatggcaataagagtcag
agtgctcgcaccaaagctttagcagaatttaaggatggaaaaatcactgttttagtagct
actgatattgctgcgcgcggtatcgacattgatcaactaccccacgttgtgaactacgac
ctgccaaacgtctccgaggattatgttcaccgcatcggtagaactggtagagctggctca
aatggagttgcagtttctttagtctgcgttgacgaacatcagatgcttcgagatatcgaa
aaactcatcaagcaaaagttgccgcaagagatcattgctggatttgagccagatccaaat
gccgtagcgcaaccaatccaattaagaagccagcaacaccagcaatccagaaagcctagg
ccaggcaatgctggcggtggtaaaagtggcggtagcggcggagctagacctgcagctaag
cgtagtagcccgccaaaacgcagctttaatcgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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