KEGG   Pseudomonas sp. ATCC 13867: H681_02745
Entry
H681_02745        CDS       T02524                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pdr  Pseudomonas sp. ATCC 13867
Pathway
pdr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pdr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    H681_02745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdr03021]
    H681_02745
   03400 DNA repair and recombination proteins [BR:pdr03400]
    H681_02745
Enzymes [BR:pdr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     H681_02745
Transcription machinery [BR:pdr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     H681_02745
DNA repair and recombination proteins [BR:pdr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      H681_02745
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF3150
Other DBs
NCBI-ProteinID: AGI22431
UniProt: M4WTD9
Position
610456..614655
AA seq 1399 aa
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNHPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSG
QVSLHARVKVRINEKIKNEDGSLTANTRIVDSTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVTDREGKQVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDRGLVMSPHIEGGDVVEPLGERVL
GRVMARDVFKPGSDEVIVEAGTLIDEKWVDFLEQMSVDEVVVRSPITCETRHGICAMCYG
RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVQVKNGGTIRL
HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEMDGTVAFVGMEEGITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
IDAAGKDLLLPGTDVPAQYFLPANALVNLNDGAKVRIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVSRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVAESGDSSFIKGDQVELVHVLEENEVLGAQDKFPAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRELGKPQR
VSASEAEAALAEALNLSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacttgcttaatctgttgaaaaaccagggtcagatcgaagagttcgatgccatc
cgtattggcctggcctcgcccgagatgatccgttcctggtccttcggcgaagtcaagaag
ccggagaccatcaactaccgtaccttcaagccggagcgcgatggcctgttctgcgccaag
atctttggcccggtgaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggtgtgatctgcgagaagtgcggcgtcgaagtcgcactggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccggtcgcccacatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctcgagaagggccagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgacgcccgcatg
ggtgcggaagccgttcgcgagctgctcaatgctatcgatctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaaaaagctgtccaagcgc
ctgaagctgatggaggccttccagggctccggcaaccatcccgagtggatggtgctgacc
gtcctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgacgccctgctcgacaacggtcgtcgcggccgtgccatcaccggctcgaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcagggtcgcttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggccctggagctgttcaagccgttc
atcttcggcaagctggaaggtcgtggcatggccaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaagtgtgggacgttctcgctgaagtcatccgcgaacacccc
gtactgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgaaggtaaagccatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtcccgctgacccttgaggctcagctggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtcgcctgccaacggcgagccgatcatc
gttccgtcgcaggacgtggtaatgggtctgtactacatgacccgtgaagcgatcaacgcg
aagggcgagggcatggcctttgccgacctgcaggaagttgaccgcgcctaccgcagcggc
caggtgtccctgcacgcccgcgtaaaagtgcgcatcaacgagaagatcaagaacgaagac
ggctccctaaccgccaacacccgtatcgtcgactccaccgtcggccgtgcgctgctgttc
caggttgtcccggccggcctgcccttcgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccactgctatcgcgtggtcggtctgaaggacaccgtcatcttc
gctgaccagctgatgtacaccggcttcgcctactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggacgaaaaggcccgcatcatcgatgccgccaccgaggaa
gtgaaggagatcgagagccagtacgcctccggcctggtaacccagggtgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaggtgaccgatcgcgaaggcaagcaggtcgaccaggagtccttcaac
tccatgtacatgatggcggactccggtgcgcggggttccgcggcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagaccccgatcacc
gcgaacttccgtgaaggcctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgacccgtcgtctc
gtcgacgtggcccaggacctggtggtgaccgagatcgactgcggcaccgatcgtggcttg
gtcatgtccccgcacatcgaaggcggcgacgtggtagagccgctgggtgaacgtgtcctc
ggccgcgtgatggctcgcgacgtgttcaagccgggcagcgacgaggtgatcgtcgaggcc
ggtaccctgatcgacgagaagtgggtcgatttcctcgagcagatgagcgtcgacgaagtc
gttgtgcgttcgccgatcacctgcgaaacccgtcacggcatctgcgccatgtgctacggc
cgcgatctggcccgtggtcaccgcgtgaacatcggtgaggcggtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccgtacttccgccgtggacaacgtgcaggtcaagaacggcggcaccatccgcctg
cacaacctgaagcacgtagagcgtgccgacggcgccctggtagcggtttcccgctccggc
gagctggcggtggccgacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gcggtgatttccgtgaaggaaggtgacaaggtcgatccgggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgagatggacggcaccgtggccttcgtgggcatg
gaagagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacattgaa
gtgatggacccgaaggatcgtccggctgccggcaaggacattcgtccggccgtgaagctg
atcgacgccgcaggcaaggatctgctgctgccgggtaccgacgtaccggcccagtacttc
ctgccggcgaacgctctggtcaacctcaacgatggcgcgaaagtgcgtatcggtgacgtt
atcgcgcgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgg
gttgccgacctgttcgaagctcgtcgtccgaaagagccttcgatcctggcggaaatcagc
ggcaccatctccttcggcaaggaaaccaagggcaagcgccgtctggtcatcactcccacc
gatggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggtgaacaggtaagccgtggtgaagtgatctccgacggcccgagcaacccgcacgacatt
ctccgcctgctgggcgtcagctcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgccagatg
ctgcgcaaggtcgaagtggccgagtcgggcgattcgtccttcatcaagggcgaccaggtc
gagctggttcacgtgctggaagagaacgaagtactgggtgcccaggacaagttcccggcc
aagtacgaacgcgttctgctgggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tcggcggcatccttccaggagaccacccgcgtcctcaccgaggcggcggtcaccggcaag
cgcgacttcctgcgcggcctgaaggagaacgtggtcgtgggtcgtctgatcccggcgggt
accggtctggcctaccacagcgagcgcaagcgtcagcgtgagctcggcaaaccgcagcgc
gtgagcgcgagcgaggccgaagcagcactggccgaagcgctcaacctgagcggtaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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