KEGG   Pseudomonas sp. ATCC 13867: H681_22700
Entry
H681_22700        CDS       T02524                                 
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pdr  Pseudomonas sp. ATCC 13867
Pathway
pdr03030  DNA replication
pdr03410  Base excision repair
pdr03420  Nucleotide excision repair
pdr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pdr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    H681_22700 (ligB)
   03410 Base excision repair
    H681_22700 (ligB)
   03420 Nucleotide excision repair
    H681_22700 (ligB)
   03430 Mismatch repair
    H681_22700 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdr03032]
    H681_22700 (ligB)
   03400 DNA repair and recombination proteins [BR:pdr03400]
    H681_22700 (ligB)
Enzymes [BR:pdr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     H681_22700 (ligB)
DNA replication proteins [BR:pdr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     H681_22700 (ligB)
DNA repair and recombination proteins [BR:pdr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     H681_22700 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     H681_22700 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     H681_22700 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      H681_22700 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase HHH_5
Other DBs
NCBI-ProteinID: AGI26407
UniProt: M4X5T6
Position
5090435..5092090
AA seq 551 aa
MPRLILALLLCPPLATYACTERTRDEIHALQAQLAQWDDAYHRQGTSPVADELYDQARER
LRQWQSCHPQIPTATDAPLASSAGDVRHPVAHTGLDKLPNAAAVRAWLTNRSDLWVQPKV
DGVAVTLVYQEGRLHQAISRGDGLTGQDWTANARQVPAIPRQLPGEHGRLVLQGELYWRL
PDHVQARQGGLGARGKVAGLMARKSLGNEGERIGLFVWELPDGPLDMPARQQRLRQLGFS
DSAERTEPVSGFAEIEAWRERWYKQPLPFASDGIVIRQGHRPPGRSWSAQAPGWAVAWKY
PYQQALAEVRRVEFKVGRSGRVTPVLHLAPVELDGRSIQRVSSGSLKRWRNLDVRPGDQV
AVTLAGLTIPRLDGVVWRSPTRADVAAPLDGQYSALTCWHATPDCRQQFLARLEWLSGKG
GLALSGVGPGTWRQLDEAGLLAGLLDWLLLTPGQLLAVPGLGERSAANLHRQFQLARQRP
FATWLRALGVPSADALPPDEDWAALAQRSAEQWQARPGIGTVRGVQLERFFHTTDVVQLQ
QQLHDVGIAGF
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgccacgcctgatcctcgccctactgctttgcccgccgcttgccacctacgcctgtacc
gaacggacacgcgacgagatacatgccctgcaagcccaactggcgcagtgggacgacgcc
taccaccggcaggggacctctcctgtcgcggacgagctgtacgaccaggcccgcgagcgg
ctgcggcagtggcagtcctgtcatccacaaatccccacagccacggatgcgcccctggcc
agcagcgccggcgacgtccgccacccggtcgcccacaccgggctcgacaagctccccaat
gccgccgccgtacgcgcctggctgacgaaccgcagcgacctctgggtgcagcccaaggtc
gatggcgttgcggtcaccctggtctaccaggaggggcggctgcaccaggcgatcagccgt
ggcgatggcctcacgggacaggactggacggccaatgcccggcaggtgcccgcgattccc
cggcagttacccggtgaacacggccggctggtgctgcagggcgagttgtactggcgcctg
ccggaccacgtgcaggcccgccagggcggcctgggggcgcgcggcaaggttgccgggctg
atggcgcgcaagtcgctcggcaacgagggcgagcggatcggcctgttcgtctgggagctt
cccgacggtcctctggacatgccggcgcgccagcagcgtctgcggcaattgggcttttcc
gacagcgccgagcggacggagcccgtcagcggattcgccgagatcgaagcctggcgcgaa
cgctggtacaagcagccgctgcccttcgccagcgacggcatcgtcattcgtcagggccac
cgccctccgggccgcagctggagcgcacaggcaccgggctgggcggtggcctggaagtac
ccgtatcaacaggcgttggccgaagttcgccgggtggagttcaaggtcggacgcagtggt
cgggtcacgccggtgctgcacctggcgccggtggaactggacggacgcagtatccagcgc
gtcagcagcggttccctgaagcgctggcgcaacctcgacgtccgtcccggcgaccaggtc
gccgtcaccctcgccggcctgaccatcccgcgcctggacggcgtggtctggcgctcgccc
acgcgcgccgacgttgccgcaccgctggacgggcagtacagcgccctgacctgctggcac
gcaacgcccgattgccggcagcagttccttgcccggctggagtggctgagcggcaaggga
gggctcgcactctccggagtgggaccggggacctggcggcagctcgacgaggccgggctg
ctggcggggctgctcgactggctactcctgacacccgggcaattgctcgcggtacccggc
ctgggcgagcgcagtgcggcgaacctgcaccgacagttccaactggcgcgccagcggccc
ttcgcgacctggctgcgcgccctcggcgtcccctccgccgacgccctgccgcccgacgaa
gactgggccgccctggcccaacgcagtgcggagcaatggcaggcccgccctgggatcggc
acggttcgcggcgtacaactggagcggttcttccacacaacggacgtcgtgcagctgcaa
cagcaactgcacgacgtcggcatcgccggtttctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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