KEGG   Photobacterium damselae subsp. damselae: CAY62_14810
Entry
CAY62_14810       CDS       T04927                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pds  Photobacterium damselae subsp. damselae
Pathway
pds03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pds00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CAY62_14810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pds03019]
    CAY62_14810
   03009 Ribosome biogenesis [BR:pds03009]
    CAY62_14810
Enzymes [BR:pds01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CAY62_14810
Messenger RNA biogenesis [BR:pds03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CAY62_14810
Ribosome biogenesis [BR:pds03009]
 Prokaryotic type
  rRNA helicases
   CAY62_14810
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: ARR51682
UniProt: A0A1X9U7F6
Position
II:28..1971
AA seq 647 aa
MQESVTEFRQLELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAF
SLPLLNKLKLSQHKPQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET
AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKGVEKDEAMMRLL
ETEDTDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTI
ERVTKSRMEEIQLPLRDAVAEARLNRLAKELEAQKEQSSVEAFVELVEKLQESIEVDAAT
LAAMLLQRQQGNRPLFYKGPDPMIAALERDKQRRDRRGNDRDRGDRGERGERRERRTFNA
ADWDTYQLQVGREQGIQVKDVVGAIANELGLNKDFIGAIKLAPEHTYVQLPKKMTAEVAA
QLKKLRIRQNEVKAVVVDGEVLREHRRGGRDGNRDGNRGGYRGNRDGNRDGNREGGRGRR
DGERRFDRNRGGDSRGTYRGERNHGGDRNNSNGGERRRSDRKPRFES
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgcaagaatctgttacagaatttcgccagttagaactggccgacacactattatccgca
ctagataaaatgggcttcgttgcgcctacacctattcaggcggcgtcaattcctttacta
ctaactggtactgatgctttgggtaaagctcaaacaggtactggtaaaacagctgcgttc
tctcttcctttattgaacaagctaaaattatctcagcataagcctcaagcaattgttatg
gctccaactcgtgagctagcgattcaggttgctgctgaagttaaaactttgggtcaaaac
atccaaggtcttaaagtattagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gcacttaaaaatggtgctcacatcgttgttggtactcctggccgtgttaaagacctaatc
actcgtgatcgtctacacctagatgaagttcatactttcgtgcttgatgaagctgacgaa
atgctaaaaatgggctttgttgacgatgtaacatggatcatggaacaagctccagagaca
gcacagcgcgttctattctctgcgacaatgcctccaatcgttaaagaaatcgttgatcgt
ttcctacgtaacccagctcgtatcgacgttgctggtgaaaaccgtactgttgctaaagtt
gatcagcagttctgggttgttaaaggcgtagagaaagatgaagctatgatgcgtcttctt
gaaacagaagatactgacgcttcaatcgtattcgtacgtacacgtcaagatactgaacgt
ctagctgattggctatgtgctcgtggctttaaagctgctgctctacacggcgatatccca
cagtctctacgtgagcgtactgttgaacacatcaaacgtggtgttatcgatatcctagta
gcaactgacgttgttgctcgtggtcttgatgtgcctcgtattactcacgtattcaactac
gatatcccatttgatgtagaatcttacattcaccgtattggtcgtactggccgtgctggt
cgtgaaggtaaggcgattctattggttcgcactaaccaaattcgtatgctacgtacaatt
gagcgtgtaacaaaatctcgtatggaagaaattcaacttcctctacgtgatgctgttgct
gaagctcgcctaaaccgtctagcgaaagaacttgaagcacaaaaagagcagagcagtgtt
gaagcattcgttgagcttgtagaaaaactacaagaatcaattgaagtggatgcagcgact
ctagcagcaatgcttcttcagcgtcagcaaggtaaccgtcctctgttctacaaaggtcca
gatccaatgatcgctgctcttgagcgtgataagcaacgtcgtgaccgtcgtggtaatgac
cgtgatcgtggtgatcgtggtgagcgcggtgaacgtcgcgagcgtcgtacttttaacgct
gcagattgggatacttaccagctacaagttggtcgtgagcaaggtattcaggttaaagat
gttgtaggtgcaattgctaacgaattaggtctaaacaaagacttcatcggtgcaatcaaa
cttgctcctgagcacacttatgttcagcttcctaagaagatgacagcagaagttgcagct
cagcttaagaaactacgtattcgtcagaacgaagtgaaagctgttgttgttgatggtgaa
gttctacgtgaacaccgtcgtggcggtcgtgatggtaatcgcgatggcaaccgtggtggt
taccgtggcaaccgcgatggtaatcgtgatggcaaccgtgaaggtggtcgtggtcgtcgt
gatggtgagcgtcgtttcgaccgtaaccgtggtggtgacagccgtggtacttaccgtggt
gagcgtaatcacggtggtgatcgcaataacagtaatggtggtgagcgtcgtcgctctgat
cgtaagcctcgcttcgaatcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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