KEGG   Paenibacillus durus: PDUR_12920
Entry
PDUR_12920        CDS       T03297                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pdu  Paenibacillus durus
Pathway
pdu02024  Quorum sensing
pdu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PDUR_12920
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PDUR_12920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdu03019]
    PDUR_12920
   03036 Chromosome and associated proteins [BR:pdu03036]
    PDUR_12920
Messenger RNA biogenesis [BR:pdu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PDUR_12920
Chromosome and associated proteins [BR:pdu03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PDUR_12920
SSDB
Motif
Pfam: Hfq DUF3378 LSM
Other DBs
NCBI-ProteinID: AIQ12706
UniProt: A0A089HL59
Position
complement(2902016..2902237)
AA seq 73 aa
MEIQKLQERLLSQFVQTKVPLTIFTTNGVKIQGILTAYDAYTLTLQGQNDGRQNVLFKSA
VSTIVPLRPVSLR
NT seq 222 nt   +upstreamnt  +downstreamnt
gtggaaattcaaaagcttcaagaacgcttgctgagccagttcgttcagaccaaggttccg
ctaacaatctttacaactaacggagtaaaaatccagggcattttgaccgcgtatgacgct
tataccttaaccttgcagggtcaaaacgacggaagacagaatgtgctgttcaaatctgcc
gtatccaccattgtgccgttaaggccggtttcactaaggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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