KEGG   Pseudoalteromonas espejiana: PESP_a1272
Entry
PESP_a1272        CDS       T04989                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pea  Pseudoalteromonas espejiana
Pathway
pea03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pea00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PESP_a1272 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pea03019]
    PESP_a1272 (deaD)
   03009 Ribosome biogenesis [BR:pea03009]
    PESP_a1272 (deaD)
Enzymes [BR:pea01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PESP_a1272 (deaD)
Messenger RNA biogenesis [BR:pea03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PESP_a1272 (deaD)
Ribosome biogenesis [BR:pea03009]
 Prokaryotic type
  rRNA helicases
   PESP_a1272 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII P-loop_SecA CMS1
Other DBs
NCBI-ProteinID: ASM49411
Position
I:complement(1220126..1221943)
AA seq 605 aa
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLDLSFEDLA
GALLCLAQQQSPIKVEEVKIQPRNERNTRNERGDRNDRRRNERGDRPERKPRERNSRDAG
PMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDVLDH
FQKVFICKRPMGMTLTQDQGPAEPRGERSERPSGDKKRSFNKDNQRGDKRGGPRKERRPV
SFTSN
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttaaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaactgcagcatttgca
ctgccgttattaaacaatattgacccgtctgtgaaacagccacagatccttgtactcaca
cctacacgtgagcttgcgatccaagttgctgaggcatttgaacaatatgcaaaaggtact
cgtggtgttgaagtattagcactatacggtggccaaagctacagcattcaattaagcgca
cttcgtcgtggcgcacaaattattgttgctactccgggtcgattaatcgatcacataaac
cgtggcactatcaagtttgatgctttacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgtagaaaacatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgaccatgcctaagcaaattcaaaacatcagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgtaactctacagtatcgtctgttgag
caagtgttttggaatgctcacgtacacaaaaacaaagcgattgttcgtttcttagaagca
gagcaatatgaaggtgctattgttttcgtacgtacacgtaacgatacagtgcagcttgct
gaattattagagcgcgaaggtttctctgctgctccacttaacggtgacatgaaccagcaa
gcgcgtgagcgcactgtagaccgtttaaaaagcggtatgctaaacgttgttattgcaaca
gacgtagcagcacgtggtcttgatgtagaccgtttaagcttagttataaactacgatatt
ccacaagactctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcaattttattcgttaagcataacgaacgttatttacttaaaaatatcattcgt
catactaaatctgaaattgcacaagttgagctacctacagctaaagtagttgaagaaaaa
cgtatcaatgcacttcaagaaaagcttacgcttgcgcttgaaaacaaagacattacgttc
ttcaatgaagttgctgctaacatggcacaaaaattagatctttcttttgaagacttagcg
ggtgcattactgtgtttagcacagcaacaatcacctattaaagttgaagaagttaagatt
cagcctcgtaacgagcgtaatacacgtaacgagcgtggcgatcgtaatgaccgtcgtcgt
aacgaacgtggtgaccgccctgagcgtaaacctcgcgagcgtaacagccgcgatgcaggc
cctatggatacataccgtatcgaagtaggtcgtgaacatggcgtacaggttaaaaatatt
gttggcgctattgctaacgaagctgatatctcaagcaagtttattggtgacattcgtctt
cacgacagtcacagtacggtacaattaccgcaaaacatgcctaaagatgtacttgatcac
ttccaaaaagtgtttatttgtaaacgcccaatgggtatgacacttacacaagatcaaggc
ccagctgagccacgtggtgagcgttctgaacgccctagtggtgataaaaagcgtagcttt
aacaaagacaaccaacgcggtgataagcgtggcggtcctcgtaaagaacgtcgccctgtg
agcttcacatctaactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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