KEGG   Pseudoalteromonas espejiana: PESP_a2562
Entry
PESP_a2562        CDS       T04989                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pea  Pseudoalteromonas espejiana
Pathway
pea03030  DNA replication
pea03410  Base excision repair
pea03420  Nucleotide excision repair
pea03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PESP_a2562 (ligA)
   03410 Base excision repair
    PESP_a2562 (ligA)
   03420 Nucleotide excision repair
    PESP_a2562 (ligA)
   03430 Mismatch repair
    PESP_a2562 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pea03032]
    PESP_a2562 (ligA)
   03400 DNA repair and recombination proteins [BR:pea03400]
    PESP_a2562 (ligA)
Enzymes [BR:pea01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PESP_a2562 (ligA)
DNA replication proteins [BR:pea03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PESP_a2562 (ligA)
DNA repair and recombination proteins [BR:pea03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PESP_a2562 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PESP_a2562 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     PESP_a2562 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PESP_a2562 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH
Other DBs
NCBI-ProteinID: ASM50513
Position
I:complement(2471596..2473614)
AA seq 672 aa
MSSSISEQINHLRSTLEQHNYNYYVLDTPSIPDAEYDRLLRELSALEIENPEFLTPDSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFSAFNRRIKERLMSTGELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPAELEVRGEVFMDSAG
FDKLNAEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHY
QQLAKLTDWGLPLCPETKLVEGTQAALEYYSDILTRRGELKYEIDGVVIKINEKALQERL
GFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
GDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPKTCPICDSHVEKVEG
EAVARCTGGLVCPAQRKQAIKHFASRKALDVDGLGDKIVDQLVDRELVKTPADLFILKQG
HFESLERMGPKSAKNLVAALEDAKATTLAKFLYSLGIREVGEATAQNLANHFLTLEEVTN
ASIDSLTQVSDVGAIVATHVRGFFDEQHNVDVVNALIEQGVNWPALSAPSEDEQPLAGLT
YVLTGTLNTLNRNDAKARLQQLGAKVAGSVSAKTDALVAGEKAGSKLTKAQDLGIEILTE
EDLIALFDKYNA
NT seq 2019 nt   +upstreamnt  +downstreamnt
atgtctagcagcattagtgagcaaattaatcatcttcgtagtactttagagcagcacaac
tataactattatgtgcttgatacacccagtattcctgatgcagaatacgaccgattatta
cgcgaactaagcgcccttgagatagaaaatccagaatttttaacacccgattcgccaaca
caaaaagtaggtggggcagcactgagtaaatttgagcaggtggcgcaccaagtacccatg
ctctcgcttgataatgcctttagcgaagatgagtttagtgcatttaatcgtcgtataaaa
gagcgcttaatgagtaccggtgaacttactttttgctgtgagccaaaactcgatggctta
gcggtatctattatttaccgtgatggcgttttagtacaagcagcaacacgaggggatgga
tttaccggtgaaaacattacccaaaacgtaaaaacaattcgtaatgtgccattaaagctg
cgcggtgattaccctgcagagcttgaagtgcgtggcgaagtctttatggatagtgcaggg
tttgataagttaaacgccgaagcacaaaaacgcggcgaaaaagtatttgtaaacccacgt
aatgcggcagctggaagtttgcgtcagcttgattcgaaaattaccgctaaacgcccgctg
atgttttatgcatacagcacaggtttggttgccgatggcagcattcctgaggatcattac
cagcaattagctaaattaaccgattggggattacccctttgcccagaaactaaattggta
gaaggcactcaagccgcacttgaatattacagcgatatactaacgcgccgtggcgagctt
aaatatgaaattgatggcgtagtaataaaaataaatgaaaaagccttacaagagcgttta
gggttcgttgcgcgtgctccacgttgggctattgcgtataaatttccggcgcaagaagaa
gtaactcaattactcgatgtagagtttcaagttggccgaacaggcgcaataacaccggtt
gctcgcttagagcccgtatttgttggcggtgttacggtatcaaatgcgacacttcataat
ggtgatgaaattgctcgtttaggtgtaaaagtaggtgatactgttattattcgccgtgct
ggcgacgtaattccacaaattacacaagtggtgcttgagcgccgccctgatgatgcccgc
gatattgagtttcctaaaacgtgtccaatttgtgactcccacgtagaaaaggtggaaggt
gaagctgtcgcccgttgtactggcggccttgtatgcccggcgcagcgcaaacaggctatt
aagcactttgcctcacgcaaagcgctagatgttgacggcctaggcgataaaatagttgac
caattagtcgatagagagctggttaaaacgcctgcagatttgtttattttaaaacaaggc
cattttgaatcacttgagcgtatggggcctaaatcggctaaaaatttagtggctgcactt
gaagatgcaaaggccaccacgcttgctaaatttttgtactctttaggcattagggaagta
ggcgaagccacagcgcaaaacttagcgaatcactttttaacccttgaagaagttacaaat
gctagcatagatagcttaacgcaagtaagtgatgtaggcgctattgtagcgactcacgtt
cgcggcttttttgatgagcagcacaatgttgatgttgtaaatgcgttaatagaacaaggg
gttaattggcctgcgcttagtgctccctcagaagatgaacagccattagctgggcttacc
tatgtacttacaggtacattaaacacattaaatcgtaatgatgctaaagcgcgcttacag
caattaggtgcaaaggtagcgggcagtgtatccgctaaaaccgatgcgttagtagcagga
gaaaaagcaggctctaaacttactaaagcacaagacctaggcattgaaatattaaccgaa
gaagacttaattgctttgttcgataaatataacgcttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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