KEGG   Pectobacterium parmentieri SCC3193: W5S_2942
Entry
W5S_2942          CDS       T02514                                 
Name
(GenBank) UvrABC system protein B
  KO
K03702  excinuclease ABC subunit B
Organism
pec  Pectobacterium parmentieri SCC3193
Pathway
pec03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    W5S_2942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pec03400]
    W5S_2942
DNA repair and recombination proteins [BR:pec03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     W5S_2942
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      W5S_2942
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD SBDS_domain_II UB2H AAA_30 AAA_22 DUF87
Other DBs
NCBI-ProteinID: AFI91025
UniProt: A0A0H3I720
Position
complement(3162564..3164576)
AA seq 670 aa
MSKVFTLHSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MMLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YARNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPR
YTIYPKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRLRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQLG
QSASKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQ
ALRAQFIAVS
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgagtaaagtatttacactgcattccgactttaaaccggcaggcgatcagcccgaggct
attcgtcgtttaaaagaaggcctggaggacgggttagcacaccaaacgctgctcggagta
acaggttcaggtaaaacgttcacgatagccaacgtgattgccgacctcaatcggccgaca
atgatgctggcgccgaataaaacgctagccgctcaactgtacggcgaaatgaaagagttc
ttccctgataatgctgtcgagtattttgtctcttactatgactactatcagccagaggcc
tacgttccaagctcagacacctttattgagaaagatgcgtcggttaacgaacatatcgaa
cagatgcgtctttcagcgacaaaagcgctgctggagcggcgcgatgtgatcgttgtggcc
tcggtgtccgctatctacggtctgggcgatcccgatctctatctgaaaatgatgctgcat
ctaacgcaggggatgctgatcgaccagcgtgctattttgcggcgtctggcagaattacaa
tatgcccgcaacgatcaggcatttcagcgcggtacgtttcgcgtgcgtggtgaggtgatc
gatattttccctgcggagtctgacgaaatagcgctgcgcgttgaattgttcgatgaagaa
gtggaacggctgtcgctgtttgatccgttgacggggcatgttcttcaaacggtgccgcgc
tataccatctacccgaaaacgcactacgtcacgccgcgtgagcgtattttacaggcgatg
gaagacattaaagttgaattggccgatcgtaaaaaggtgttactggccaacgataagctg
gtggaagagcagcgcctgagccagcgcacgcagtttgatctggagatgatgaacgagctt
ggttactgctccggtatcgaaaactactcacgctatctttcaggtcgtggccccggtgag
ccaccgccgacgctgtttgactaccttcctgcggatgggctgttggtgattgatgaatcc
cacgtcaccgtgccccagatcggcgggatgtatcgcggcgaccgtgcgcgtaaagagacg
ctggtcgaatacggtttccggttgccttcggcgctggataaccgaccgatgaagtttgaa
gaatttgaagcgttggccccgcagacgatctatgtgtctgcgacaccgggtaactatgag
ctggaaaaatcgggcggtgaaattatcgatcaggtggttcggcccaccggattgctcgac
ccgctcattgaagtacggcctgtcgcgacacaggtggacgacctgctttccgaaattcgc
ctgcgtgcggtgattaacgaacgtgtgctggtgacgacgctgaccaagcggatggcggaa
gacctgacggaatatctggaagagcacggcgagcgggtgcgctatctgcactcggatatt
gataccgtcgagcgtgtggaaatcatccgggatttacgccttggtgagttcgatgtgctg
gtcggtatcaacctgttgcgtgaagggctggatatgccagaagtgtcgctggtggcgatt
ctggatgctgacaaagaaggcttcctgcgctctgaacgctccctgatccagacgattggc
cgcgcggcgcgtaacctgcgtggcaaggctattctttacggtgacagaattacagcgtca
atggcgaaagcgattagcgaaacagagcggcgtcgcgagaagcaggaggcgtacaacacc
gagcacgggattgtgccgcagggaattaataagaaaatttccgatattctgcaactgggt
caatcggcgagtaaaggcaaagggcgaggtaaccgtaaagcggcagaacccgcagcgcgt
tatgaactcatgacgccgaaggcgctggagctgaaaatccgcgagttggaaagtaagatg
ttaacgcacgcgcagaatcttgaattcgaagaggctgccgccttgcgcgatgaagtgcag
gcattacgcgcacaatttattgccgtctcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system