KEGG   Planctopirus ephydatiae: Spb1_32360
Entry
Spb1_32360        CDS       T06220                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
peh  Planctopirus ephydatiae
Pathway
peh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:peh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Spb1_32360 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:peh03019]
    Spb1_32360 (rnr)
   03016 Transfer RNA biogenesis [BR:peh03016]
    Spb1_32360 (rnr)
Enzymes [BR:peh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Spb1_32360 (rnr)
Messenger RNA biogenesis [BR:peh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Spb1_32360 (rnr)
Transfer RNA biogenesis [BR:peh03016]
 Prokaryotic type
  tRNA degradation factors
   Spb1_32360 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 OB_RNB
Other DBs
NCBI-ProteinID: QDV31292
UniProt: A0A518GRT5
Position
4080945..4083371
AA seq 808 aa
MADWQPQILSVVTHPAYTPLKWQQLAKEVGAQKHDWTKFRRSLEELIEGKRLHRTSGGLI
KVPVAREHIIGTIKRAARGHAWFTPESLANQPHIEPYTVAAEDAGSALTGDKVSAIILKK
RGPNGKIAVRVIDILERATTQFVGEYHESRGKGYVTVDNSRFERPIDVGDPGAKGVRPGD
QVVIEMVHFPEFSMPGEAVLLKVLGQRGEPGVDLQSIIYEFGLPDEFPEAVLEESRLQAQ
LFSEDDIGDRLDLRDELIITIDPLTARDFDDAISLKQHEDGSWTLGVHIADVAHFVRPGT
ELDKEAIRRGNSVYLPGKVLPMLPEVLSNALASLQQDKVRFVKSAFIEYSPDGMVKHTSF
ANAAIKVRRRFAYEQVMPLLLNRQSPGEHPAPEGETVPEEICQLLERMYELAMILRKRRF
SRGALELSLGEVELDCNDDGNVTGAHRALHDASHQIIEEFMLAANVAVAEEFDRRGWFFL
RRVHDSPDELRMQNFAKFVATLGYDLPRAQDRQAIQALLDEVAGQPEAFPLNYALLRSLK
QAEYSPEKIGHYALAVDNYAHFTSPIRRYPDLTIHRLLEHVIADTSFTHSIPAAESSGTA
NDRKKSKSSRADLLSEAELRQLGKQCSLTERRAEKAERELIKIRLIRYLADKVGLELNAT
ITGVERFGLFCQGIELPAEGLVHLSDLPGDYYDVDQIAHAVIGRRSGRVFRLGDPVRVQV
SSVDPAKRELNFRIVGRPGQDETLPEGEFSRETTGDHRSRSASDQSSGSPRRRSQPRFPG
DRSSSSAKGGFRQKKQSSSPKKSRKKPR
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggccgactggcaaccacaaatcttgagtgtcgtcacgcaccctgcgtacacaccactc
aaatggcagcagttagccaaagaagtgggtgcccagaaacatgactggacaaaattccgc
cgctcgctcgaagaactcatcgaaggcaagcggctgcatcgcacttccggcgggctgatc
aaagtccctgttgcacgcgagcacatcatcggcaccatcaaacgcgcagcgcgcggccac
gcctggttcactcccgaatcactcgccaatcaaccgcatatcgaaccttatacagttgct
gccgaagatgccggctcggcactcacgggcgataaagtctcagccatcatcctcaaaaag
cgcggccccaacggaaagatcgctgtccgcgtgattgatatcctcgaacgcgccaccact
cagttcgtgggcgaatatcacgaatcccgcggcaaaggctatgtcactgtcgataacagc
cgttttgaacggccgattgatgtgggcgaccccggtgcgaaaggtgtccgccccggtgat
caggttgtcatcgaaatggtacacttccccgagttttcaatgcccggtgaagcggtactg
ctcaaagtcctgggccagcgcggtgaaccgggcgtcgatctgcaatcgatcatctatgag
ttcggcctccctgatgaattccccgaagccgtactcgaagaatcgcgactgcaggcacag
cttttctccgaagatgatatcggtgaccgcctcgatcttcgcgacgaactgatcatcacc
atcgatcccctcacagcccgcgattttgacgacgccatttctctcaagcagcacgaagat
ggttcgtggactctcggagtccatattgctgatgtggctcactttgtgcggcccggcaca
gaactcgataaagaggccattcgacgaggcaacagcgtttaccttcccggcaaagtgctc
cccatgcttcccgaagtgctctccaatgcactcgcaagtcttcagcaggataaagtccgc
ttcgtcaaaagtgccttcatcgaatactcccctgatggcatggtgaagcacaccagcttt
gccaatgctgccatcaaggtccgcagacgcttcgcgtacgaacaggtgatgccacttcta
ttaaatcggcaatctccgggcgaacatccggctccagaaggtgagacagttcccgaagaa
atctgccagcttctcgaacgcatgtacgaactggccatgattctgcgcaaacgacgcttt
tctcgcggtgccctcgaactctcactcggcgaagtcgaacttgattgcaatgacgatggc
aatgtcaccggggcgcaccgagcgctgcacgacgccagccaccagatcattgaagaattc
atgctggcggccaacgtcgctgtggccgaagaatttgatcgccgcggctggtttttcctg
cgccgggttcacgacagccccgatgaactccgcatgcagaactttgccaaattcgtcgcc
acactcggctacgacttaccgcgagcacaggatcgtcaggcgattcaggcactgctcgac
gaagtcgccggccagcctgaggctttcccgctcaattacgcacttttgcggagtctgaag
caggccgaatactctccggaaaagatcggccactatgccttggcagtcgacaattatgcc
cactttaccagtccgatccgtcgctatcccgatctcaccattcaccgcctgctggaacat
gtgatcgccgatacttccttcacgcacagtattccagccgctgaatcatcgggcacagcc
aacgatcgaaaaaagtcgaaatcttcacgagccgatcttctctcggaagccgaattgcga
cagttgggcaagcaatgctcactcaccgaacgtcgagccgagaaagccgagcgggaactg
ataaaaatccggctcattcgctacctggcggataaggtgggcctcgaactcaacgccaca
attaccggcgtggaacgctttgggctcttctgccagggaattgaacttcctgccgaaggt
cttgtgcatctttccgacctgcctggcgattactacgacgtcgatcagattgcccatgcc
gtcattggccgacgatctggccgggtattccgcctgggtgatccggtgcgtgttcaggta
tccagtgttgatcccgcgaagcgagaactcaactttcgcattgtcgggcgaccaggccag
gatgaaactcttccagaaggtgaattctctcgggaaaccaccggggatcatcgatctcgc
tctgcttccgatcaatcatccggcagtcccagacgacgatctcaaccacgttttcccggc
gaccgctcaagctcttctgccaaaggcgggttccgccagaagaaacagagctcgagcccc
aaaaaatctcgcaagaagccgcgataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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